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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[GAAGAAATTCCAGGATATGTATTCTTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGGTCTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTTTCTTTTCTGTATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTACTCCTGCGCCCCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATACTAACTTGAAGCCATTGGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAGGCCTAGAGGTTTAGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGTTCAGCTGTAGGATATTCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTATCAGTCACCAATCCTGCTAACCCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAAAAGGCAGATCCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCCGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGGAGCTATCAACTACCAAAGNGACTTTTTTTTTTTTTTTGCCACCATCAGTTCAGNGGGAGTAGAGGAGTCGTCCCTCATGCAGATGGTATCTTACCGGGAGNTATACTGGATTTTAAGNTGNCAATTTTGNCCCATCTTAACTACCATGCTGGAGACTAC]
[+] EMBL CA766106 [GAAGAAATTCCAGGATATGTATTCTTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGGTCTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTTTCTTTTCTGTATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTACTCCTGCGCCCCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATACTAACTTGAAGCCATTGGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAGGCCTAGAGGTTTAGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGTTCAGCTGTAGGATATTCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTATCAGTCACCAATCCTGCTAACCCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAAAAGGCAGATCCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCCGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGGAGCTATCAACTACCAAAGNGACTTTTTTTTTTTTTTTGCCACCATCAGTTCAGNGGGAGTAGAGGAGTCGTCCCTCATGCAGATGGTATCTTACCGGGAGNTATACTGGATTTTAAGNTGNCAATTTTGNCCCATCTTAACTACCATGCTGGAGACTAC]
consensusID : consensus_5726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[ATGTTCAGCTGTAGGATATTTTTCAGAAATTAGTTCGCCCAATAATGCTGGGATTTCCCATTTATCAGTCCCCAATCCTGTTACCCCAGAAATTCCTTGGGCTGTTACTTTCATCATCCATCGCCATTAGAAAAAGGCAGATCCCTCAGGCCGTGCATTTGCCAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCACCTTGAGGGGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTTTGTAGCATTCCATCCACCAGGAGCTATCAACTACCAAGTGCCTTTTTTTTTTTTGCCCCCATCAGTTCAGTGGAGTAGGGGAGTGGTCCTCATGCAGATGTTATTTTACTGTAGTTATACGGATTTTAAGTTGCCAATTTTGCCCCTTTTTAATTCCCATGCTGTAGATTATTATGAAGTTTGGCCCCCCCGGCAACTTCAATTTTGCTGTAATGCCAAGGGGAGCCCGGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTCCCTGTGACTTCTGCAAATGAATGGAACAGGGG]
[-] EMBL CB627867 [ATGTTCAGCTGTAGGATATTTTTCAGAAATTAGTTCGCCCAATAATGCTGGGATTTCCCATTTATCAGTCCCCAATCCTGTTACCCCAGAAATTCCTTGGGCTGTTACTTTCATCATCCATCGCCATTAGAAAAAGGCAGATCCCTCAGGCCGTGCATTTGCCAATTTGGCCCTGCTTCAGGCTGAAATTGATTGGTCCCATCACCTTGAGGGGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTTTGTAGCATTCCATCCACCAGGAGCTATCAACTACCAAGTGCCTTTTTTTTTTTTGCCCCCATCAGTTCAGTGGAGTAGGGGAGTGGTCCTCATGCAGATGTTATTTTACTGTAGTTATACGGATTTTAAGTTGCCAATTTTGCCCCTTTTTAATTCCCATGCTGTAGATTATTATGAAGTTTGGCCCCCCCGGCAACTTCAATTTTGCTGTAATGCCAAGGGGAGCCCGGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTCCCTGTGACTTCTGCAAATGAATGGAACAGGGG]
consensusID : consensus_5726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[CATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGAGCTATCAACTACCAAGTGACTTTTTTTTTTTTTTGCCACCATCAGTTCCGTGGAGTAGAGGAGTCCGCCTCATGCAGATGTTATCTTACTGTAGTTATACTGATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCATGCTGTAGACTACTATGAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAAGAGGAGCCCTGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTACCTGTGACTACTGCAAATGAATGGAACAAGAAACGCACGTCTTCAAAAAGCGGC]
[-] EMBL AU225556 [CATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGATTGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGGACATCAAACTTCTGTAGCATTACATCCAACAGGAGCTATCAACTACCAAGTGACTTTTTTTTTTTTTTGCCACCATCAGTTCCGTGGAGTAGAGGAGTCCGCCTCATGCAGATGTTATCTTACTGTAGTTATACTGATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCATGCTGTAGACTACTATGAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAAGAGGAGCCCTGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTACCTGTGACTACTGCAAATGAATGGAACAAGAAACGCACGTCTTCAAAAAGCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5726#1 ------------------------------------------------------------
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 GAAGAAATTCCAGGATATGTATTCTTTTTTTTTCGTGATTCTGCCCATCGTCTGAAGGGT 60
consensus_5726#1 ------------------------------------------------------------
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 CTGACGAAGATACAAGCTAAAGCAGCGCCATCCAGTGAAACAACACCGTTTTCTTTTCTG 120
consensus_5726#1 ------------------------------------------------------------
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 TATGTCTGGAGCAAGAAGTATCAAACTGTTTTCCTTTCATATAATCTTTACTCCTGCGCC 180
consensus_5726#1 ------------------------------------------------------------
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 CCTTATTTTTTGGCTGGTGCGACATGAAATATACTGATACTAACTTGATACTAACTTGAA 240
consensus_5726#1 ------------------------------------------------------------
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 GCCATTGGTTGTCCATAACTCCATATAGAACCTGAGCTAGAGGCTAAGGCCTAGAGGTTT 300
consensus_5726#1 -----------------------------------------------ATGTTCAGCTGTA 13
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 AGTGACTTCTGTACGAGGTACCATACGGTATATCCTGGATTCATTCCATGTTCAGCTGTA 360
consensus_5726#1 GGATATTTTTCAGAAATTAGTTCGCCCAATAATGCTGGGATTTCCCATTTATCAGTCCCC 73
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 GGATATTCTTCAGAAATTAGTTCGACCAATAATGCTGGGATCTCCCATTTATCAGTCACC 420
consensus_5726#1 AATCCTGTTACCCCAGAAATTCCTTGGGCTGTTACTTTCATCATCCATCGCCATTAGAAA 133
consensus_5726#2 ------------------------------------------------------------
consensus_5726#0 AATCCTGCTAACCCAGAAATTCCTTCGGCTGCTACTTTCATCATCCATCGACATTAGAAA 480
consensus_5726#1 AAGGCAGATCCCTCAGGCCGTGCATTTGCCAATTTGGCCCTGCTTCAGGCTGAAATTGAT 193
consensus_5726#2 ----------CATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAACTGAT 50
consensus_5726#0 AAGGCAGATCCATCAGGACGTGCATTTGACAATTTGGCCCTGCTTCAGGCTGAAATTGAT 540
* ***** ********** ************************** ****
consensus_5726#1 TGGTCCCATCACCTTGAGGGGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGG 253
consensus_5726#2 TGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCTGAACAAGATTGGG 110
consensus_5726#0 TGGTCCCATCAACTTGATGAGGTTATGAAATTTCAAGATGTGATCCCGAACAAGATTGGG 600
*********** ***** * ************************** *************
consensus_5726#1 ACATCAAACTTTTGTAGCATTCCATCCACCAGG-AGCTATCAACTACCAA-GTGCCTTTT 311
consensus_5726#2 ACATCAAACTTCTGTAGCATTACATCCAACAGG-AGCTATCAACTACCAA-GTGACTTTT 168
consensus_5726#0 ACATCAAACTTCTGTAGCATTACATCCAACAGGGAGCTATCAACTACCAAAGNGACTTTT 660
*********** ********* ****** **** **************** * * *****
consensus_5726#1 TTTTTTT---TGCCCCCATCAGTTCAGTGG-AGTAGGGGAGTGGTCC-TCATGCAGATGT 366
consensus_5726#2 TTTTTTTTT-TGCCACCATCAGTTCCGTGG-AGTAGAGGAGTCCGCC-TCATGCAGATGT 225
consensus_5726#0 TTTTTTTTTTTGCCACCATCAGTTCAGNGGGAGTAGAGGAGTCGTCCCTCATGCAGATGG 720
******* **** ********** * ** ***** ***** ** ***********
consensus_5726#1 TATTTTACTGT-AGTTATACGG-ATTTTAAGTTGCCAATTTTGCCCCTTTTTAATTCCCA 424
consensus_5726#2 TATCTTACTGT-AGTTATACTG-ATTTTAAGTTGCCAATTTTGCCACATCTTAACTACCA 283
consensus_5726#0 TATCTTACCGGGAGNTATACTGGATTTTAAGNTGNCAATTTTGNCCCATCTTAACTACCA 780
*** **** * ** ***** * ******** ** ******** * * * **** * ***
consensus_5726#1 TGCTGTAGATTATTATGAAGTTTGGCCCCCCCGGCAACTTCAATTTTGCTGTAATGCCAA 484
consensus_5726#2 TGCTGTAGACTACTATGAAGTCTGGACACCCCGGCAACTTCAATTTTGCTGTAATGACAA 343
consensus_5726#0 TGCTGGAGACTAC----------------------------------------------- 793
***** *** **
consensus_5726#1 GGGGAGCCCGGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTCCCTGTGACTTC 544
consensus_5726#2 GAGGAGCCCTGCGTTTCATGTGAATTTGATGATTTGATCAATGTTTTTACCTGTGACTAC 403
consensus_5726#0 ------------------------------------------------------------
consensus_5726#1 TGCAAATGAATGGAACAGGGG---------------------- 565
consensus_5726#2 TGCAAATGAATGGAACAAGAAACGCACGTCTTCAAAAAGCGGC 446
consensus_5726#0 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||