cluster # 5785

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5785 cluster # 5785 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5785#0 length = 421 sequences # 1

consensus_5785#1 length = 215 sequences # 1
consensus_5785#2 length = 177 sequences # 1

consensusID : consensus_5785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA]

[+] EMBL AU069374             [AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA]




>consensus_5785#0
AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCA
AGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGG
TCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGN
CGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTC
TTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGG
TCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAA
CATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATG
A

consensusID : consensus_5785#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGAAGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG]

[+] EMBL AU067896             [TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGAAGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG]




>consensus_5785#1
TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGA
AGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCC
GCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGG
CGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG

consensusID : consensus_5785#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC]

[+] EMBL OSR23302A            [GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC]




>consensus_5785#2
GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGC
CTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAG
CTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5785#1      TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGA 60
consensus_5785#2      ------------------------------------------------GAACGAAGAAGA 12
consensus_5785#0      ------------------------------------------------------AGAAGA 6
                                                                            ******

consensus_5785#1      AGAAGACGCGAANTCNGGGN-GCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 119
consensus_5785#2      AGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 72
consensus_5785#0      AGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 66
                      ************ **  **  **** **********************************

consensus_5785#1      CGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGG- 178
consensus_5785#2      CGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNT 132
consensus_5785#0      CGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGG- 125
                      **** ************ ******************** ** ********* * ***   

consensus_5785#1      GGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG----------------------- 215
consensus_5785#2      NNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC--------------- 177
consensus_5785#0      GNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCG 185
                         ***  * *    **      ** ** * **                           

consensus_5785#1      ------------------------------------------------------------
consensus_5785#2      ------------------------------------------------------------
consensus_5785#0      ATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGA 245
                                                                                  

consensus_5785#1      ------------------------------------------------------------
consensus_5785#2      ------------------------------------------------------------
consensus_5785#0      GGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAG 305
                                                                                  

consensus_5785#1      ------------------------------------------------------------
consensus_5785#2      ------------------------------------------------------------
consensus_5785#0      AGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGT 365
                                                                                  

consensus_5785#1      --------------------------------------------------------
consensus_5785#2      --------------------------------------------------------
consensus_5785#0      CATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA 421