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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2419 fasta sequence
[CCATTGCTGGGAAGTGAAGAAGATGAAGGAGAGGGAGAAGGTGGTGCGACTGGCCAAGCTCGCCGAGCAGGCGGAGAGATACGACGATATGGTGGAATTTATGAAGACACTTGCTAGGATGGATGTGGATATGAGTGCTGAAGAGAGGCTTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGACCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCCTTCCATTGGCCAATTCGGGTGAAAATGTCGTGTTCTTTTATAAGATGTATGTGCAGGTTCATCAAGTCAATTATTTGCTTCTCAATTGTGTTTTACTTCATATCGGTCTATTTCCTAATGGTTACATTCAGAATTTATTCCCAAACAAACATCTTATTATTATCCAGGCATATTTTGATGATGCAATCTTTTTCTTTGTAGAAGAATACACAACTTTGAGCTCATGTAGTGTTTTGAATAGCATTGACATAACACATCCATATGAGTTTCTGACTTTCTGCTAAATTCTCTTCCTAAGAAATGCTTGACTGAACACCTTGGTCCAAAGAATTGCAGAAGGTGACAAACATGTTGACTTTGCTCTGCTTTAAACTTTGACATCAACCAGGTTTTACCAAATGATGCTAAGGTTTCATAGAATCAAAGATTTAAACATACCAGCCATGACTCATGTGTCATTCCTCCAGGGACTAACTATGCTGACCTTTTTTGCTCACAGTATCCAAAAACTTATAGGTAACCTCATGACATATAGTTTTGCTCACATGGTCCTAAAGTTTCAGAATAAAGACTAAATTATCATAATTTAAAGGGCAGTATGATACATATATATACTGATAAATAAAGGGAAGGCTTCTAAATAAGCAAGGAGTTGAAGAGCTGATCTGTGCCAGCACATTAGCTTAACTTGTTTATTTATCTAATTCTGCACAGAAATGCAAGTACTTTTTTTTTCTTTAGTGCACGACCATTTGTAGTGTTGGGGTATTCTTCAGAAAAGGAAAGGGAAACAAGACCTAAAGATGAGATGAACCTCTTGATTCCCCAACTGTTTTCTTAGTCTTGGTCTTTAATTAAATCATGTTACACCTGGATTGTTCTACATTTTAGCCTATACCTGAGCATAGTTTCTTATGAAGCTTTGCTAAGTTGTTTTTCCATAATAATACCTTCTGGTGAAAGTTTCCATAATAATTAAAGTTTCAATAATTATTTACTAAGCTTTTGGATTACTCAATTATCTTTTCCATCATTGTTTTTCAAGTATTAACAATGAAAAAAAAAACTGAATAGTGCCTCACTAGTTCTGAAGTTTCCCCTCAGTACCTCTTGTTTCAGATATTTTGAGATTTTCTGAGATGAGATGTTATAAGATTATACTAGGATCTTATGTGTTGCCCTGGTAATCTATTTAACAATGGGCAGGTTGGTTTTCTATCAATTAACCGAGGATCTTCCCTCTATAGTATGTGCATGTTCGCACGATACTCATGTGTATATCTTTTTTCTTTAATCTGCTTTATACATCACTCTTAAAAAAATTACAGGAAGGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAGGCTGCTACTGATCAGTCCCTTATGGCCTATCAGCACGCCATGGTTGTTGCCTCCAGTGAGCTTTCTCCTGCCCATCAATTCAGGCTTGGCCTTGCGCTCAACTTTTCAGTCTTCTTGAGATAATGAACTCTCCTGAGAGAGCTAGCCAAGTGGCAAAACAAGCACTTGATGAGGCTACTGCTGAGATTAACTCTGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACCTGGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTATGGAGGGCTAACTGTCTGAAATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAACATTGTAACAATACTGCTACTGAACTTGCGACATTTATCATGGGAGCCGTGGAAATCACCTTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGTGACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTTTGAGATCTTGGAGTGGTCACCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTTCCAATGCTTGTTAAGCATCTTTGTATACCAACGGGATGATGAACTATATATCTCTTAATGATGACGAAATAAACGTCTCTTT]
[+] EMBL AK072443 [CCATTGCTGGGAAGTGAAGAAGATGAAGGAGAGGGAGAAGGTGGTGCGACTGGCCAAGCTCGCCGAGCAGGCGGAGAGATACGACGATATGGTGGAATTTATGAAGACACTTGCTAGGATGGATGTGGATATGAGTGCTGAAGAGAGGCTTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGACCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCCTTCCATTGGCCAATTCGGGTGAAAATGTCGTGTTCTTTTATAAGATGTATGTGCAGGTTCATCAAGTCAATTATTTGCTTCTCAATTGTGTTTTACTTCATATCGGTCTATTTCCTAATGGTTACATTCAGAATTTATTCCCAAACAAACATCTTATTATTATCCAGGCATATTTTGATGATGCAATCTTTTTCTTTGTAGAAGAATACACAACTTTGAGCTCATGTAGTGTTTTGAATAGCATTGACATAACACATCCATATGAGTTTCTGACTTTCTGCTAAATTCTCTTCCTAAGAAATGCTTGACTGAACACCTTGGTCCAAAGAATTGCAGAAGGTGACAAACATGTTGACTTTGCTCTGCTTTAAACTTTGACATCAACCAGGTTTTACCAAATGATGCTAAGGTTTCATAGAATCAAAGATTTAAACATACCAGCCATGACTCATGTGTCATTCCTCCAGGGACTAACTATGCTGACCTTTTTTGCTCACAGTATCCAAAAACTTATAGGTAACCTCATGACATATAGTTTTGCTCACATGGTCCTAAAGTTTCAGAATAAAGACTAAATTATCATAATTTAAAGGGCAGTATGATACATATATATACTGATAAATAAAGGGAAGGCTTCTAAATAAGCAAGGAGTTGAAGAGCTGATCTGTGCCAGCACATTAGCTTAACTTGTTTATTTATCTAATTCTGCACAGAAATGCAAGTACTTTTTTTTTCTTTAGTGCACGACCATTTGTAGTGTTGGGGTATTCTTCAGAAAAGGAAAGGGAAACAAGACCTAAAGATGAGATGAACCTCTTGATTCCCCAACTGTTTTCTTAGTCTTGGTCTTTAATTAAATCATGTTACACCTGGATTGTTCTACATTTTAGCCTATACCTGAGCATAGTTTCTTATGAAGCTTTGCTAAGTTGTTTTTCCATAATAATACCTTCTGGTGAAAGTTTCCATAATAATTAAAGTTTCAATAATTATTTACTAAGCTTTTGGATTACTCAATTATCTTTTCCATCATTGTTTTTCAAGTATTAACAATGAAAAAAAAAACTGAATAGTGCCTCACTAGTTCTGAAGTTTCCCCTCAGTACCTCTTGTTTCAGATATTTTGAGATTTTCTGAGATGAGATGTTATAAGATTATACTAGGATCTTATGTGTTGCCCTGGTAATCTATTTAACAATGGGCAGGTTGGTTTTCTATCAATTAACCGAGGATCTTCCCTCTATAGTATGTGCATGTTCGCACGATACTCATGTGTATATCTTTTTTCTTTAATCTGCTTTATACATCACTCTTAAAAAAATTACAGGAAGGGTGACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAGGCTGCTACTGATCAGTCCCTTATGGCCTATCAGCACGCCATGGTTGTTGCCTCCAGTGAGCTTTCTCCTGCCCATCAATTCAGGCTTGGCCTTGCGCTCAACTTTTCAGTCTTCTTGAGATAATGAACTCTCCTGAGAGAGCTAGCCAAGTGGCAAAACAAGCACTTGATGAGGCTACTGCTGAGATTAACTCTGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACCTGGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTATGGAGGGCTAACTGTCTGAAATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAACATTGTAACAATACTGCTACTGAACTTGCGACATTTATCATGGGAGCCGTGGAAATCACCTTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGTGACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTTTGAGATCTTGGAGTGGTCACCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTTCCAATGCTTGTTAAGCATCTTTGTATACCAACGGGATGATGAACTATATATCTCTTAATGATGACGAAATAAACGTCTCTTT]
consensusID : consensus_579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[GTGTAACAATAAAGGGGTCCACAAAAAANTTTGGGGGTGAACTAAGGCCAGTTCCAATGAGGTTTTTTAATTATTGCTATTCAAAAAAATTGTTATTTCAGGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCCCTTGAGCAGAAGGTGACAGGTGGTGAGCAACCAGGTGTAACAATAAAGGGCTACAAAAAGAAAGTAGGGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTTCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAAAAAAAAAA]
[-] EMBL CA759537 [GTGTAACAATAAAGGGGTCCACAAAAAANTTTGGGGGTGAACTAAGGCCAGTTCCAATGAGGTTTTTTAATTATTGCTATTCAAAAAAATTGTTATTTCAGGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCCCTTGAGCAGAAGGTGACAGGTGGTGAGCAACCAGGTGTAACAATAAAGGGCTACAAAAAGAAAGTAGGGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTTCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGGTGAGCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGCAGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_579#0 CCATTGCTGGGAAGTGAAGAAGATGAAGGAGAGGGAGAAGGTGGTGCGACTGGCCAAGCT 60
consensus_579#1 ---------------------------------------------------------GTG 3
*
consensus_579#0 CGCCGAGCAGGCGGAGAGATACGACGATATGGTGGAATTTATGAAGACACTTGCTAGGAT 120
consensus_579#1 TAAC-AATAAAGGGGTCCACAAAAAANTTTGGGGGTGAAC-TAAGGCCAGTTCCAATGAG 61
* * * ** * * * * *** ** * * * ** ** * * **
consensus_579#0 GGATGTGGATATGAGTGCTGAAGAGAGGCTTTTATTTTCAGTTGGTTTTAAGAAAACTAT 180
consensus_579#1 GTTTTTTAATTATTGCTATTCAAAAAAATTGTTATTTCAGGTTGGTTTTAAGAAAACTAT 121
* * * ** * * * * * * ****** ********************
consensus_579#0 TGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGG 240
consensus_579#1 TGGTGCCAGGAGAGCATCATGGAGAATCCTTGAATCCCTTGAGCAGAAGGTGACAGGTGG 181
************************************ ******************* ***
consensus_579#0 TGACCAACCAGGTGTAACAATAAATGGCTACAAAAAGAAAGTAGAGGATGAACTAAGGGC 300
consensus_579#1 TGAGCAACCAGGTGTAACAATAAAGGGCTACAAAAAGAAAGTAGGGGATGAACTAAGGGC 241
*** ******************** ******************* ***************
consensus_579#0 AGTTTGCAATGAAGTATTATCAATTATTGCTATTCATTGCC--TTCCATTGGCCAATTCG 358
consensus_579#1 AGTTTGCAATGAAGTATTATCAATTATTGCTATTCAAAAAAAATTTTATTT-TCAGTTGG 300
************************************ ** *** ** ** *
consensus_579#0 GGTGAAAATGTCGTGTTCTTTTATAAGATGTATGTGCAGGTTCATCAAGTCAATTATTTG 418
consensus_579#1 TTTTAAGAAAACTATTGGTTCCAGGAGAGCATCATGGAGAATCCTTGAATCACTTGAGCA 360
* ** * * * ** * *** ** ** ** * * *** **
consensus_579#0 CTTCTCAATTGTGTTTTACTTCATATCGGTCTATTTCCTAATGGTTACATTCAGAATTTA 478
consensus_579#1 GAAGGTGACAGCTGGTGA--GCAACCAGGTGTAACAATAAATGGCTACAAAAAGAA---- 414
* * * * ** *** ** ***** **** ****
consensus_579#0 TTCCCAAACAAACATCTTATTATTATCCAGGCATATTTTGATGATGCAATCTTTTTCTTT 538
consensus_579#1 ------AGTAGAGGATGAACTAA-----GGGCAGTTTGCAATGAAGTATTATCAATTATT 463
* * * * ** **** ** **** * * * * * **
consensus_579#0 GTAGAAGAATACACAACTTTGAGCTCATGTAGTGTTTTGAATAGCATTGACATAACACAT 598
consensus_579#1 GCTATTCAAAAAA-AATTTTATTTTCAGTTGGTTTTAAGAAAACTATTGGTGCCAGGAGA 522
* ** * * ** *** *** * ** ** *** * **** *
consensus_579#0 CCAT-ATGAGTTTCTGACTTTCTGCTAAATTCTCTTCCTAAGAAATGCTTGACTGAACAC 657
consensus_579#1 GCATCATGGA-----GAATCCTTGAATCACTTGAGCAGAAGGTGACAGCTGG-TGAGCAA 576
*** *** ** * ** * * * * * ** *** **
consensus_579#0 CTTGGTCCAAAGAATTGCAGAAGGTGACAAACATGTTGACTTTGCTCTGCTTTAAACTTT 717
consensus_579#1 CCAGGTGTAACAA----TAAATGGCTACAAAAAGA--AAGTAGAGGATGAACTAAGGGCA 630
* *** ** * * * ** ***** * * * ** ***
consensus_579#0 GACATCAACCAGGTTTTACCAAATGATGCTAAGGTTTCATAGAATCAAAGATTTAAACAT 777
consensus_579#1 GTTTGCAATGAAGTATTATCAATTATTGCTA----TTCAAAAAAAAAAAAA---AAA--- 680
* *** * ** *** *** * ***** **** * ** *** * ***
consensus_579#0 ACCAGCCATGACTCATGTGTCATTCCTCCAGGGACTAACTATGCTGACCTTTTTTGCTCA 837
consensus_579#1 ------------------------------------------------------------
consensus_579#0 CAGTATCCAAAAACTTATAGGTAACCTCATGACATATAGTTTTGCTCACATGGTCCTAAA 897
consensus_579#1 ------------------------------------------------------------
consensus_579#0 GTTTCAGAATAAAGACTAAATTATCATAATTTAAAGGGCAGTATGATACATATATATACT 957
consensus_579#1 ------------------------------------------------------------
consensus_579#0 GATAAATAAAGGGAAGGCTTCTAAATAAGCAAGGAGTTGAAGAGCTGATCTGTGCCAGCA 1017
consensus_579#1 ------------------------------------------------------------
consensus_579#0 CATTAGCTTAACTTGTTTATTTATCTAATTCTGCACAGAAATGCAAGTACTTTTTTTTTC 1077
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TTTAGTGCACGACCATTTGTAGTGTTGGGGTATTCTTCAGAAAAGGAAAGGGAAACAAGA 1137
consensus_579#1 ------------------------------------------------------------
consensus_579#0 CCTAAAGATGAGATGAACCTCTTGATTCCCCAACTGTTTTCTTAGTCTTGGTCTTTAATT 1197
consensus_579#1 ------------------------------------------------------------
consensus_579#0 AAATCATGTTACACCTGGATTGTTCTACATTTTAGCCTATACCTGAGCATAGTTTCTTAT 1257
consensus_579#1 ------------------------------------------------------------
consensus_579#0 GAAGCTTTGCTAAGTTGTTTTTCCATAATAATACCTTCTGGTGAAAGTTTCCATAATAAT 1317
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TAAAGTTTCAATAATTATTTACTAAGCTTTTGGATTACTCAATTATCTTTTCCATCATTG 1377
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TTTTTCAAGTATTAACAATGAAAAAAAAAACTGAATAGTGCCTCACTAGTTCTGAAGTTT 1437
consensus_579#1 ------------------------------------------------------------
consensus_579#0 CCCCTCAGTACCTCTTGTTTCAGATATTTTGAGATTTTCTGAGATGAGATGTTATAAGAT 1497
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TATACTAGGATCTTATGTGTTGCCCTGGTAATCTATTTAACAATGGGCAGGTTGGTTTTC 1557
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TATCAATTAACCGAGGATCTTCCCTCTATAGTATGTGCATGTTCGCACGATACTCATGTG 1617
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TATATCTTTTTTCTTTAATCTGCTTTATACATCACTCTTAAAAAAATTACAGGAAGGGTG 1677
consensus_579#1 ------------------------------------------------------------
consensus_579#0 ACTACTACCGTTACTTGGCTGAATTTAGCACTGGAACTGAAAAGAAGGCTGCTACTGATC 1737
consensus_579#1 ------------------------------------------------------------
consensus_579#0 AGTCCCTTATGGCCTATCAGCACGCCATGGTTGTTGCCTCCAGTGAGCTTTCTCCTGCCC 1797
consensus_579#1 ------------------------------------------------------------
consensus_579#0 ATCAATTCAGGCTTGGCCTTGCGCTCAACTTTTCAGTCTTCTTGAGATAATGAACTCTCC 1857
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TGAGAGAGCTAGCCAAGTGGCAAAACAAGCACTTGATGAGGCTACTGCTGAGATTAACTC 1917
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TGCTGGTGTGGAGGGTTACAAGGACAGCATGCTTATGATGCAGCTCCTGAAGGAGAACCT 1977
consensus_579#1 ------------------------------------------------------------
consensus_579#0 GGCATTGTGGACATCAGAACTAACTGGAGGTGAAACATCTAAGGACGATGATGTTGTTAT 2037
consensus_579#1 ------------------------------------------------------------
consensus_579#0 GGAGGGCTAACTGTCTGAAATGTTCTAAAGGCCCCAGCATGTGAGCAAAACAATCAGTAA 2097
consensus_579#1 ------------------------------------------------------------
consensus_579#0 CATTGTAACAATACTGCTACTGAACTTGCGACATTTATCATGGGAGCCGTGGAAATCACC 2157
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TTTATTTTTCCCTTTCTTCTGTAGTTTCTTTTTTTTGGCCCTCGCTTGGGTCTTGGTGTG 2217
consensus_579#1 ------------------------------------------------------------
consensus_579#0 ACTCCCAAAGTATTTTCAGAGTTTGGATTTGATAACCATGCACCAGCTTTGGTTATATTT 2277
consensus_579#1 ------------------------------------------------------------
consensus_579#0 TGAGATCTTGGAGTGGTCACCAACCCAGCTTTAATATTAGTTTGAGAGTACTTTTTTTTT 2337
consensus_579#1 ------------------------------------------------------------
consensus_579#0 CCAATGCTTGTTAAGCATCTTTGTATACCAACGGGATGATGAACTATATATCTCTTAATG 2397
consensus_579#1 ------------------------------------------------------------
consensus_579#0 ATGACGAAATAAACGTCTCTTT 2419
consensus_579#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||