cluster # 5804

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Oryza sativa
cluster # 5804 cluster # 5804 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5804#0 length = 666 sequences # 1

consensus_5804#1 length = 632 sequences # 1
consensus_5804#2 length = 567 sequences # 1

consensusID : consensus_5804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [TCATCCATCCACAAACACAAGCATTGCAAACTCAAGGTAGAGTTTTCAAGCTTCCATTTCAATTATTCTTGCAAACTCAAGGAAGAGAAATGGCCATGATCAGCGCCAAGAGGATTGCTCAGCTAGCAAAGAAATGGCGAAGGATGGCAGCACTGGGGAGGAAGAGGCTTACAATGTCGTCGACGGCGATGGCGACGGAAGAAGCCCAAGGTTGCTCCACGGCGGTGGCCGGCAAGGGTCACTGCGCCATCTACACCGCCGACGGCGCGCGGTTCGAGGTGCCATTGGCGTACCTCGGCACGGCGGTCTTGGGCGAGCTCCTGACCATGTCTCGGGAGGAGTACGGCTTCTCCGGCGACGGCAAGATCACGCTGCCGTGTGACGCCATGGTGATGGAGTACGTGTTGTGCTTGCTCGGAAGAAACGCTTCGGCAGAGGTTGAGAAGGCGTTCTTGAGCTCCATGGTGATGCCGTGCCACTATGCAAGCTGTGTGACACCATCTCTGGGAGCTTGTCAGCAAGTTGCTGTTTGCAGTAACTAGCATTACCAACTGTTGTTTGTTTGACAGTTAGCAGTATTGTGTGTAGAGTAGTTCAGACGTAGATAGAATTGAAAAGGAAGCTGTACAATCTCTCAGATGATCAAATCATAATGAAATGGTTCGC]

[+] EMBL AK058556             [TCATCCATCCACAAACACAAGCATTGCAAACTCAAGGTAGAGTTTTCAAGCTTCCATTTCAATTATTCTTGCAAACTCAAGGAAGAGAAATGGCCATGATCAGCGCCAAGAGGATTGCTCAGCTAGCAAAGAAATGGCGAAGGATGGCAGCACTGGGGAGGAAGAGGCTTACAATGTCGTCGACGGCGATGGCGACGGAAGAAGCCCAAGGTTGCTCCACGGCGGTGGCCGGCAAGGGTCACTGCGCCATCTACACCGCCGACGGCGCGCGGTTCGAGGTGCCATTGGCGTACCTCGGCACGGCGGTCTTGGGCGAGCTCCTGACCATGTCTCGGGAGGAGTACGGCTTCTCCGGCGACGGCAAGATCACGCTGCCGTGTGACGCCATGGTGATGGAGTACGTGTTGTGCTTGCTCGGAAGAAACGCTTCGGCAGAGGTTGAGAAGGCGTTCTTGAGCTCCATGGTGATGCCGTGCCACTATGCAAGCTGTGTGACACCATCTCTGGGAGCTTGTCAGCAAGTTGCTGTTTGCAGTAACTAGCATTACCAACTGTTGTTTGTTTGACAGTTAGCAGTATTGTGTGTAGAGTAGTTCAGACGTAGATAGAATTGAAAAGGAAGCTGTACAATCTCTCAGATGATCAAATCATAATGAAATGGTTCGC]




>consensus_5804#0
TCATCCATCCACAAACACAAGCATTGCAAACTCAAGGTAGAGTTTTCAAGCTTCCATTTC
AATTATTCTTGCAAACTCAAGGAAGAGAAATGGCCATGATCAGCGCCAAGAGGATTGCTC
AGCTAGCAAAGAAATGGCGAAGGATGGCAGCACTGGGGAGGAAGAGGCTTACAATGTCGT
CGACGGCGATGGCGACGGAAGAAGCCCAAGGTTGCTCCACGGCGGTGGCCGGCAAGGGTC
ACTGCGCCATCTACACCGCCGACGGCGCGCGGTTCGAGGTGCCATTGGCGTACCTCGGCA
CGGCGGTCTTGGGCGAGCTCCTGACCATGTCTCGGGAGGAGTACGGCTTCTCCGGCGACG
GCAAGATCACGCTGCCGTGTGACGCCATGGTGATGGAGTACGTGTTGTGCTTGCTCGGAA
GAAACGCTTCGGCAGAGGTTGAGAAGGCGTTCTTGAGCTCCATGGTGATGCCGTGCCACT
ATGCAAGCTGTGTGACACCATCTCTGGGAGCTTGTCAGCAAGTTGCTGTTTGCAGTAACT
AGCATTACCAACTGTTGTTTGTTTGACAGTTAGCAGTATTGTGTGTAGAGTAGTTCAGAC
GTAGATAGAATTGAAAAGGAAGCTGTACAATCTCTCAGATGATCAAATCATAATGAAATG
GTTCGC

consensusID : consensus_5804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [GACGAGACAAGGGGGATTCACAACAAGATTAGTACTAGCAATCTAAAGCATTTAGCCTCAGACCAACAGAGTGCATCTAGCTAGTTTAGCCAAAGAAGAAAAAAAAAGCAGCAGAACCCTGATTCATGCAAAGAAGCTTGCTCAGTTGGCCAGGAAGTTGCAGCAGAAGATGGTATCAGCCAGAGGTGGCCGGCACACGTCCAGCGCCACTGACGATTGCTGCAGCACATCCTCTCTTGCCGGCAAGGGCCACTGCACGGTGTATACTGCTGATGGAGCACGGTTCGAGGTACCACTGCCGTACCTCGGCACGATGGTTTTTGGCGAGCTTTTGATGATGTCTCAGGAGGAGTTTGGCTTCGCAGGTGACGATGGCAGGATCACGTTGCCGTGCGATGCGTCAGTGATGGAGTATGTCTTGTGTCTGCTTAGGAGAGATGCCTCTGAAGAGGTTGAGAGGGCATTCTTGAGCTCCATGGCGAGGCCTTGCCACAATGTTAGAGTGTTCAGCCATCAACTTGCTGTTTGTACATAGCTCATTAGCTCCTGATGTAAATGTTAGGATTATATACGAGAAACAGATCATTCAGATGATGCAAAACAGCATTTTTTTCCTGTCAAAAAAAAAAAAA]

[-] EMBL CA762058             [GACGAGACAAGGGGGATTCACAACAAGATTAGTACTAGCAATCTAAAGCATTTAGCCTCAGACCAACAGAGTGCATCTAGCTAGTTTAGCCAAAGAAGAAAAAAAAAGCAGCAGAACCCTGATTCATGCAAAGAAGCTTGCTCAGTTGGCCAGGAAGTTGCAGCAGAAGATGGTATCAGCCAGAGGTGGCCGGCACACGTCCAGCGCCACTGACGATTGCTGCAGCACATCCTCTCTTGCCGGCAAGGGCCACTGCACGGTGTATACTGCTGATGGAGCACGGTTCGAGGTACCACTGCCGTACCTCGGCACGATGGTTTTTGGCGAGCTTTTGATGATGTCTCAGGAGGAGTTTGGCTTCGCAGGTGACGATGGCAGGATCACGTTGCCGTGCGATGCGTCAGTGATGGAGTATGTCTTGTGTCTGCTTAGGAGAGATGCCTCTGAAGAGGTTGAGAGGGCATTCTTGAGCTCCATGGCGAGGCCTTGCCACAATGTTAGAGTGTTCAGCCATCAACTTGCTGTTTGTACATAGCTCATTAGCTCCTGATGTAAATGTTAGGATTATATACGAGAAACAGATCATTCAGATGATGCAAAACAGCATTTTTTTCCTGTCAAAAAAAAAAAAA]




>consensus_5804#1
GACGAGACAAGGGGGATTCACAACAAGATTAGTACTAGCAATCTAAAGCATTTAGCCTCA
GACCAACAGAGTGCATCTAGCTAGTTTAGCCAAAGAAGAAAAAAAAAGCAGCAGAACCCT
GATTCATGCAAAGAAGCTTGCTCAGTTGGCCAGGAAGTTGCAGCAGAAGATGGTATCAGC
CAGAGGTGGCCGGCACACGTCCAGCGCCACTGACGATTGCTGCAGCACATCCTCTCTTGC
CGGCAAGGGCCACTGCACGGTGTATACTGCTGATGGAGCACGGTTCGAGGTACCACTGCC
GTACCTCGGCACGATGGTTTTTGGCGAGCTTTTGATGATGTCTCAGGAGGAGTTTGGCTT
CGCAGGTGACGATGGCAGGATCACGTTGCCGTGCGATGCGTCAGTGATGGAGTATGTCTT
GTGTCTGCTTAGGAGAGATGCCTCTGAAGAGGTTGAGAGGGCATTCTTGAGCTCCATGGC
GAGGCCTTGCCACAATGTTAGAGTGTTCAGCCATCAACTTGCTGTTTGTACATAGCTCAT
TAGCTCCTGATGTAAATGTTAGGATTATATACGAGAAACAGATCATTCAGATGATGCAAA
ACAGCATTTTTTTCCTGTCAAAAAAAAAAAAA

consensusID : consensus_5804#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CAAGATACTAGCAATCTAAGCATCCAATTTCAGATCAACCAGACTGCATCTAGTTTAGCCAAAAAGCTAGCAAATCAACCATGATCAGTGCAAAGAAGCTTGCTCAGTTGGCCAAGAAGTTGCAGATGAGGATGGCATCAGCCGGTGGTAGCCGACAGAAGGCGGTGGTCGCCGCCGATGATTGCTGCAGCACGGCGTCTCTATCCCTCGCCGGCAAGGGCCACTGCGCGGTGTACACCGCCGACGGCGCGCGGTTCGAGGTGCCATTGCCGTACCTAGGCACGCCGCTCTTCGGCGAGCTCCTGACCATGTCCCGGGAGGAGTTCGGCTTCGCCGGCGACGACGGCAGGATCACGTTGCCGTGCGATGCGTCGGTGATGGAGTACGTCATGTGCTTGCTTAGCAGAGATGCCTCTGAAGAGGTCGAGAGGGCGTTCTTGAGCTCCATGGCGAGGCCCTGCCGCAATATCGGAGTAATCAGCCACCAATTTGCTGTTTGTACTTAGCTCATTAGCTCCTAGCTCCTGATGTAAACTCATCCGGATGATAATACAAAAGTAGCACAAT]

[+] EMBL AK062898             [CAAGATACTAGCAATCTAAGCATCCAATTTCAGATCAACCAGACTGCATCTAGTTTAGCCAAAAAGCTAGCAAATCAACCATGATCAGTGCAAAGAAGCTTGCTCAGTTGGCCAAGAAGTTGCAGATGAGGATGGCATCAGCCGGTGGTAGCCGACAGAAGGCGGTGGTCGCCGCCGATGATTGCTGCAGCACGGCGTCTCTATCCCTCGCCGGCAAGGGCCACTGCGCGGTGTACACCGCCGACGGCGCGCGGTTCGAGGTGCCATTGCCGTACCTAGGCACGCCGCTCTTCGGCGAGCTCCTGACCATGTCCCGGGAGGAGTTCGGCTTCGCCGGCGACGACGGCAGGATCACGTTGCCGTGCGATGCGTCGGTGATGGAGTACGTCATGTGCTTGCTTAGCAGAGATGCCTCTGAAGAGGTCGAGAGGGCGTTCTTGAGCTCCATGGCGAGGCCCTGCCGCAATATCGGAGTAATCAGCCACCAATTTGCTGTTTGTACTTAGCTCATTAGCTCCTAGCTCCTGATGTAAACTCATCCGGATGATAATACAAAAGTAGCACAAT]




>consensus_5804#2
CAAGATACTAGCAATCTAAGCATCCAATTTCAGATCAACCAGACTGCATCTAGTTTAGCC
AAAAAGCTAGCAAATCAACCATGATCAGTGCAAAGAAGCTTGCTCAGTTGGCCAAGAAGT
TGCAGATGAGGATGGCATCAGCCGGTGGTAGCCGACAGAAGGCGGTGGTCGCCGCCGATG
ATTGCTGCAGCACGGCGTCTCTATCCCTCGCCGGCAAGGGCCACTGCGCGGTGTACACCG
CCGACGGCGCGCGGTTCGAGGTGCCATTGCCGTACCTAGGCACGCCGCTCTTCGGCGAGC
TCCTGACCATGTCCCGGGAGGAGTTCGGCTTCGCCGGCGACGACGGCAGGATCACGTTGC
CGTGCGATGCGTCGGTGATGGAGTACGTCATGTGCTTGCTTAGCAGAGATGCCTCTGAAG
AGGTCGAGAGGGCGTTCTTGAGCTCCATGGCGAGGCCCTGCCGCAATATCGGAGTAATCA
GCCACCAATTTGCTGTTTGTACTTAGCTCATTAGCTCCTAGCTCCTGATGTAAACTCATC
CGGATGATAATACAAAAGTAGCACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5804#1      GACGAGACAAGGGGGATTCACAACAAGATTAGTACTAGCAATCTAAAGCATTTAGCCTCA 60
consensus_5804#2      -----------------------CAAGAT----ACTAGCAATCTAA-GCATCCAATTTCA 32
consensus_5804#0      -----------------TCATCCATCCACAAACACAAGCATTGCAA---ACTCAAGGTAG 40
                                                 *     ** **** *  **   *   *   *  

consensus_5804#1      GACCAAC-AGAGTGCATCTAGCTAGTTTAGCCAAAGAAGAAAAAAAAAGCAGCAGAACCC 119
consensus_5804#2      GATCAACCAGACTGCATCTAG----TTTAGCCAAA-------AAGCTAGCAAATCAACCA 81
consensus_5804#0      AGTTTTCAAGCTTCCATTTCAATTATTCTTGCAAAC----TCAAGGAAGAGAAATGGCCA 96
                            * **  * *** *      **    ****       **   **        ** 

consensus_5804#1      TGATTCATGCAAAGAAGCTTGCTCAGTTGGCCAGGAAGTTGCAGCAGAAGATGGTATCAG 179
consensus_5804#2      TGATCAGTGCAAAGAAGCTTGCTCAGTTGGCCAAGAAGTTGCAGATGAGGATGGCATCAG 141
consensus_5804#0      TGATCAGCGCCAAGAGGATTGCTCAGCTAGCAAAGAAATGGCGAAGGATGGCAGCACTGG 156
                      ****    ** **** * ******** * ** * *** * **    ** *   * *   *

consensus_5804#1      CCAGAGGTGGCCGGCACA---CGTCCAGCGCCACTGACGATTGCTGCAGCACATCCTCTC 236
consensus_5804#2      CCGGTGGTAGCCGACAGAAGGCGGTGGTCGCCGCCGATGATTGCTGCAGCACGGCGTCTC 201
consensus_5804#0      GGAGGAAGAGGCT-TACAATGTCGTCGACGGCGATGGCGACGGAAGAAGCCCAAGGTTGC 215
                         *     * *   * *          ** *   *  **  *  * *** *    *  *

consensus_5804#1      T------TG----CCGGCAAGGGCCACTGCACGGTGTATACTGCTGATGGAGCACGGTTC 286
consensus_5804#2      TATCCCTCG----CCGGCAAGGGCCACTGCGCGGTGTACACCGCCGACGGCGCGCGGTTC 257
consensus_5804#0      TCCACGGCGGTGGCCGGCAAGGGTCACTGCGCCATCTACACCGCCGACGGCGCGCGGTTC 275
                      *       *    ********** ****** *  * ** ** ** ** ** ** ******

consensus_5804#1      GAGGTACCACTGCCGTACCTCGGCACGATGGTTTTTGGCGAGCTTTTGATGATGTCTCAG 346
consensus_5804#2      GAGGTGCCATTGCCGTACCTAGGCACGCCGCTCTTCGGCGAGCTCCTGACCATGTCCCGG 317
consensus_5804#0      GAGGTGCCATTGGCGTACCTCGGCACGGCGGTCTTGGGCGAGCTCCTGACCATGTCTCGG 335
                      ***** *** ** ******* ******  * * ** ********  ***  ***** * *

consensus_5804#1      GAGGAGTTTGGCTTCGCAGGTGACGATGGCAGGATCACGTTGCCGTGCGATGCGTCAGTG 406
consensus_5804#2      GAGGAGTTCGGCTTCGCCGGCGACGACGGCAGGATCACGTTGCCGTGCGATGCGTCGGTG 377
consensus_5804#0      GAGGAGTACGGCTTCTCCGGCGACG---GCAAGATCACGCTGCCGTGTGACGCCATGGTG 392
                      *******  ****** * ** ****   *** ******* ******* ** **    ***

consensus_5804#1      ATGGAGTATGTCTTGTGTCTGCTTAGGAGAGATGCCTCTGAAGAGGTTGAGAGGGCATTC 466
consensus_5804#2      ATGGAGTACGTCATGTGCTTGCTTAGCAGAGATGCCTCTGAAGAGGTCGAGAGGGCGTTC 437
consensus_5804#0      ATGGAGTACGTGTTGTGCTTGCTCGGAAGAAACGCTTCGGCAGAGGTTGAGAAGGCGTTC 452
                      ******** **  ****  ****  * *** * ** ** * ****** **** *** ***

consensus_5804#1      TTGAGCTCCATGGCGAGGCCTTGCCACAATGTTAG------------------AGTGTTC 508
consensus_5804#2      TTGAGCTCCATGGCGAGGCCCTGCCGCAATATCGG------------------AGTAATC 479
consensus_5804#0      TTGAGCTCCATGGTGATGCCGTGCCACTATGCAAGCTGTGTGACACCATCTCTGGGAGCT 512
                      ************* ** *** **** * **    *                   *     

consensus_5804#1      AGCCATCAACTTGCTGTTTG---TACATAGC-TCATTAGCTCCTG---ATGTAAATGTTA 561
consensus_5804#2      AGCCACCAATTTGCTGTTTG---TACTTAGC-TCATTAGCTCCTA---GCTCC--TGATG 530
consensus_5804#0      TGTCAGCAAGTTGCTGTTTGCAGTAACTAGCATTACCAACTGTTGTTTGTTTGACAGTTA 572
                       * ** *** **********   **  **** * *  * **  *            * * 

consensus_5804#1      GGATTAT-ATACGAGAAACAGATCATTCAGATGATGCA---AAACAGCATTTTTTTCCTG 617
consensus_5804#2      TAAACTC-ATCCGGATGATA----ATACAAAAGTAGCA---CAAT--------------- 567
consensus_5804#0      GCAGTATTGTGTGTAGAGTAGTTCAGACGTAGATAGAATTGAAAAGGAAGCTGTACAATC 632
                        *      *  *      *    *  *  *    * *    **                

consensus_5804#1      TCAAAAAAAAAAAAA------------------- 632
consensus_5804#2      ----------------------------------
consensus_5804#0      TCTCAGATGATCAAATCATAATGAAATGGTTCGC 666