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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence
[AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAGGTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTTGGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCCAGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAGTTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAAGTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAAGGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAGGAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA]
[+] EMBL CB630695 [AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAGGTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTTGGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCCAGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAGTTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAAGTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAAGGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAGGAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA]
[+] EMBL CF195700 [ GGCACNAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTNNNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTCAGNAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGGANNNNNNACAACANNNCAGATCCTnnnnnagt ]
consensusID : consensus_5813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence
[GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNCAACNNNNNAGATC]
[+] EMBL CF195833 [GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGTAATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGATTTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAGAAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCCATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGGACCANNTNCAACNNNNNAGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5813#0 AGACCTAAAGCCTCAAATGCTTTACCTTTTGGCCTTGTAGTTCAGGATAGTGGTGCAAAG 60
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 GTTTCTTCCACAAAGTTGTCTGATGAAAGACGAAGCGCCGGAGTACCAACATCAGAACTT 120
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 GGCGATTTGGGGTTGGTTGATGAGCAATCCTTTACTGTACGTGACAACGATGCAGCGTCC 180
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 AGAGAATATGGAGGGGTTAAGGGTGTGAGCATGAATAAAAGAGCAGTTCAACAAGAGAAG 240
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 TTCTCAGCCCACCAGGTACCGCTACCACTCTTTATAAGCGATCAGAAAGCAGCTCCAGAA 300
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 GTAAATTTGCATTTGAAGGAAGTCACTAACTTCAGACTAGAGGACTCTGATATCAGTAAA 360
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 GGAAACTCTGGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT 420
consensus_5813#1 ---------GGCACAAAGGAAGAAGATGTTAACTGCTTTAGCCCGCAAGCAACAGAGAGT 51
***************************************************
consensus_5813#0 AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT 480
consensus_5813#1 AATCATGACAGAACAGTGTTTATTTCTGTGACAAACCTGGAAAATTCTAGTCGTTCTGAT 111
************************************************************
consensus_5813#0 TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGCAAG 540
consensus_5813#1 TTCATATTTGCGGCATCAACTGATCATAGTAAATTGCACTCACAAAGACGACCTAGNAAG 171
******************************************************** ***
consensus_5813#0 AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC 600
consensus_5813#1 AAAAAAATTGGAGGAATGAGTAATCATGCTAATTCTGTTGAAAGCCATCCGTCATCTGCC 231
************************************************************
consensus_5813#0 ATTGGTCTTGCACACTCAGAAATCTCAAGGCAGCAATACACAGATTTACCTGCTCAATGG 660
consensus_5813#1 ATTGGTCTTGCACACTNNNNNATCTNNNGGCNNNANNANNNAGATTTACCTGCTCANTGG 291
**************** **** *** * * *************** ***
consensus_5813#0 ACCAAATACAACAAAACAGATCCTAAAACAGTTACAGTGAGTGTAGGACCAGCAATTAAG 720
consensus_5813#1 ACCANNTNCAACNNNNNAGATC-------------------------------------- 313
**** * **** *****
consensus_5813#0 GAAAACATTGGACATCAAGAAGACTGTGAAACATGGCGTATAAGGGGGAACCA 773
consensus_5813#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||