cluster # 5815

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Oryza sativa
cluster # 5815 cluster # 5815 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5815#0 length = 566 sequences # 1

consensus_5815#1 length = 532 sequences # 2

consensusID : consensus_5815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGAAAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACGCTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGTGCTGCGTAAATAAGATGTGGCATGCCCAATGTGTGCGCTGTGCAACGCCTGCATGTGGTTGTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTTTGACCCCCCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACATGGACTGGACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGACACAGTTTCTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAATTACCACATTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGACAGAATCTGCCAATGCCTTTCTTTCAAAAAAAAA]

[+] EMBL BI803784             [TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGAAAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACGCTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGTGCTGCGTAAATAAGATGTGGCATGCCCAATGTGTGCGCTGTGCAACGCCTGCATGTGGTTGTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTTTGACCCCCCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACATGGACTGGACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGACACAGTTTCTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAATTACCACATTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGACAGAATCTGCCAATGCCTTTCTTTCAAAAAAAAA]




>consensus_5815#0
TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGA
AAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACG
CTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGT
GCTGCGTAAATAAGATGTGGCATGCCCAATGTGTGCGCTGTGCAACGCCTGCATGTGGTT
GTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTTTGACCCC
CCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACATGGACTGG
ACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGACACAGTTT
CTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAATTACCACA
TTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGACAGAATCT
GCCAATGCCTTTCTTTCAAAAAAAAA

consensusID : consensus_5815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 532
fasta sequence

                              [GTTTCACACTTTCTTTAGGCTACAATTTTCAAACTTGATACAGTCGGTACACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACTATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGGCAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTAGAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATGCTGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAATATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAAGCACTAGAGTTTCTTTCCCTTGTAAAGAAGAATCTGGCATGGCTTTCTTTCAAAAAAAAAA]

[+] EMBL BI804675             [GTTTCACACTTTCTTTAGGCTACAATTTTCAAACTTGATACAGTCGGTACACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACTATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGGCAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTAGAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATGCTGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAATATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAAGCACTAGAGTTTCTTTCCCTTGTAAAGAAGAATCTGGCATGGCTTTCTTTCAAAAAAAAAA]
[+] EMBL BI803039             [                                                ACACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACTATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGGCAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTAGAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATCCTGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAATATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAA CACTAGAGTTTCTTTCCCTTGTAAAGAACCCTCTGCAATGCCTTTCTTTCAAAAAAAAAA]




>consensus_5815#1
GTTTCACACTTTCTTTAGGCTACAATTTTCAAACTTGATACAGTCGGTACACAGTCATTT
CTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACT
ATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAA
GCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGG
CAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTA
GAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATGC
TGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAAT
ATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAAGCACTAGAG
TTTCTTTCCCTTGTAAAGAAGAATCTGGCATGGCTTTCTTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5815#0      TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGA 60
consensus_5815#1      ---------GTTTCACACTTTCT-TTAGGCTACAATTTTCAAACTTGATACAGTCGGTAC 50
                                  * * * *** *    **** *    *  **  *   *   **  **  

consensus_5815#0      AAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACG 120
consensus_5815#1      ACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTT 110
                      * * * **  **** *  *       **  *  *     *  *   * **  *** *   

consensus_5815#0      CTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGT 180
consensus_5815#1      TCAGTGGACTATTATAAACTTGTC-TAAG--AAGAGCAGAACACTGTTGTTTCCATA--- 164
                        **    *   * *    *** * * **   *  * *    *  *  * * ****    

consensus_5815#0      GCTGCGTAAATAAGATGTGGCATGCCC---AATGTGTGCGCTGTGCAACGCC--TGCATG 235
consensus_5815#1      GCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAG 224
                      **   **** ** ** *   ***  *    ***  *   **    ***   *  * ** *

consensus_5815#0      --TGGTTGTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTT 293
consensus_5815#1      CCTCATTGTTTTAAGGCAACCTTT-----CATTGT-CACAGAATG--TTTGGAGAAGCTT 276
                        *  *****  *  ******* *       * ** * *******  ** **********

consensus_5815#0      TGACCCCCCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACAT 353
consensus_5815#1      TA--CCCACTG--AAGAAAGACACAGTAGAGTCATTGCAAGATCTT-GCAGAAGTGACAT 331
                      *   *** ***  *  ** *** *********************** *************

consensus_5815#0      GGACTGGACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGAC 413
consensus_5815#1      GGACTG--CAAAGGAGCTCCTTTT-CGCATGCTGTAGATG-ACAACCATCTGAAGAGGA- 386
                      ******  **************** * * *********** ****************** 

consensus_5815#0      ACAGTTTCTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAAT 473
consensus_5815#1      ACAGTTTCTCAGTCTCCAAGA-ACAGTGTTTC--AATATGGGATTAGTG-ATTGCTTAAT 442
                      ********************* ****** ***  *************** **********

consensus_5815#0      TACCACATTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGAC 533
consensus_5815#1      TAC-ACATTTCTTTTTTCTTGATATGTAAAGCACTAGAGTTTCTT-TCCCTTGTAAAGA- 499
                      *** ************************** ************** ************* 

consensus_5815#0      AGAATCTGCCAATGCCTTTCTTTCAAAAAAAAA- 566
consensus_5815#1      AGAATCTGGCA-TGGCTTTCTTTCAAAAAAAAAA 532
                      ******** ** ** ******************