cluster # 5878

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Oryza sativa
cluster # 5878 cluster # 5878 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5878#0 length = 605 sequences # 1

consensus_5878#1 length = 565 sequences # 2

consensusID : consensus_5878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCTCCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGAATGGTCTGGCGAGGTTCGCAGCATTGTTTATTCATCTGATGGAAAATCTGTATCTGTTATTTATCGCGTGACTCTCCATGGAACTGATGCAGAGATCTACAGAGAAGCCACTGGAACTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTTTTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTCATAAATGCTTA]

[+] EMBL CA753737             [CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCTCCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGAATGGTCTGGCGAGGTTCGCAGCATTGTTTATTCATCTGATGGAAAATCTGTATCTGTTATTTATCGCGTGACTCTCCATGGAACTGATGCAGAGATCTACAGAGAAGCCACTGGAACTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTTTTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTCATAAATGCTTA]




>consensus_5878#0
CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCT
CCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCG
CGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGG
CGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCT
CAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTT
CTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGA
ATGGTCTGGCGAGGTTCGCAGCATTGTTTATTCATCTGATGGAAAATCTGTATCTGTTAT
TTATCGCGTGACTCTCCATGGAACTGATGCAGAGATCTACAGAGAAGCCACTGGAACTTC
TTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTTTTCG
CCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTCATAAAT
GCTTA

consensusID : consensus_5878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 565
fasta sequence

                              [TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCG-GCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGG-TTCTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCCTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGTTCTGCGAAG-TGTGAACTACATGTAATTG-TGGTTCGTTCGTGTAAAAAATTGGGATTGATTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTTTGAGAGGAGCTAGATTATATATTTA]

[-] EMBL BI799361             [TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCG GCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGG TTCTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCCTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGTTCTGCGAAG TGTGAACTACATGTAATTG TGGTTCGTTCGTGTAAAAAATTGGGATTGATTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTTTGAGAGGAGCTAGATTATATATTTA]
[-] EMBL BI799275             [TCCTCGCGCGCCCCTTCGCCGCGAAGG CCGCGCGTCGCGCCGG CGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCGTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGTTCTG GAAGTTGTGAACTACATGTAATTGTTGGTTCG TCGTGTAAAAAA TGGGATTGATTG                                                          ]




>consensus_5878#1
TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCGCCGGCCGCAGGAGCCGGCCT
TCCCGTCGGAGGACGAGGACGACTTCGCCGGCGGCGAGGTGGCCGGCCCGCGCCCACCGA
AGGCATCAGCAAGCCGCTCGCCGAGGTCCTCAGGGAGCTCGGTAAGAGGGTCCCCGAGGC
CCTCGTCAAGACGCGCGTCGAAGATGGTTCTCCCTGAAGTACATCCCATGGTGAGCCCGC
TCGATCACTTTCGATGGCCTATCGAAATCCTCCCTTCCTACACACCAACACAGGGATCGG
CTTATTTTGGGAGATTTCCCTGTTAGTTTTTAACGCCTTGCGCGTATTTGCGGATTTTTG
ATGTGGTTTACATTAATGTCCTAGATTATACTTGTAGAATCGTGCTTAGCAGCTGAATGA
TGCTTGGACCTAACACACTACACTGTTCTGCGAAGTGTGAACTACATGTAATTGTGGTTC
GTTCGTGTAAAAAATTGGGATTGATTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTT
TGAGAGGAGCTAGATTATATATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5878#0      CGCCCCCTCCGCATCCCCCGATTCCCCCGCCATGGCTTCCGGTGCCCTAGCCCGCCTCCT 60
consensus_5878#1      ------------------------------------------------------------
                                                                                  

consensus_5878#0      CCTCGGCCGCCGCGCGGCCGCCACCCCTCTCCTCGCGCGCCCCTTCGCCGCGAAGGCCCG 120
consensus_5878#1      -----------------------------TCCTCGCGCGCCCCTTCGCCGCGAAGGCCCG 31
                                                   *******************************

consensus_5878#0      CGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGG 180
consensus_5878#1      CGCGTCGCGCCGGCCGCAGGAGCCGGCCTTCCCGTCGGAGGACGAGGACGACTTCGCCGG 91
                      ************************************************************

consensus_5878#0      CGGCGAGGTGGCCGCGCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCT 240
consensus_5878#1      CGGCGAGGTGGCCG-GCCCGCGCCCACCGAAGGCATCAGCAAGCCGCTCGCCGAGGTCCT 150
                      ************** *********************************************

consensus_5878#0      CAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGGCTT 300
consensus_5878#1      CAGGGAGCTCGGTAAGAGGGTCCCCGAGGCCCTCGTCAAGACGCGCGTCGAAGATGG-TT 209
                      ********************************************************* **

consensus_5878#0      CTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCCAGA 360
consensus_5878#1      CTCCCTGAAGTACATCCCATGGTGAGCCCGCTCGATCACTTTCGATG-GCCTATCGAAAT 268
                      **********************            *  * * *  **   * *     *  

consensus_5878#0      ATGGTCTGGCGAGGTTCGCAGCATTG---TTTATTCATCTGATGGAAAATCTGTATCTGT 417
consensus_5878#1      CCTCCCTTCCTACACAC-CAACACAGGGATCGGCTTATTTTGGGAGATTTCCCTGTTAGT 327
                           **  * *    * ** **  *   *    * ** *   *  *  **  * *  **

consensus_5878#0      TATTTATCGCGTGACTCTCCATG-GAACTGATGCAGAGATCTACAGAGAAGCCACTGGAA 476
consensus_5878#1      TTTTAACGCCTTGCGCGTATTTGCGGATTTTTGATGTGGTTTACATTAATGTC-CTAGAT 386
                      * ** *   * **    *   ** * * *  **  * * * ****   * * * ** ** 

consensus_5878#0      CTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAGAAGGCTGAAGCAATGGCTT 536
consensus_5878#1      TATACTTGTAGAATCGTGCTTAGCAGCTGAATGATGCTTGGACCTAACACACTACACTGT 446
                        *  *      **  * *     *     **  **    **      *  * *     *

consensus_5878#0      TTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTATCATGAAGATATGTC-A 595
consensus_5878#1      TCTGCGAAGTGTGAACTACATGTAATTGTGG--TTCGTTCGTGTAAAAAATTGGGATTGA 504
                      *  **  **  ** **      *  *  ***  *** *   * * *  **      *  *

consensus_5878#0      TAAATGCTTA-------------------------------------------------- 605
consensus_5878#1      TTGATGGAGAGGAAAAAATTTGGGCACCTGGTGGTTTGAGAGGAGCTAGATTATATATTT 564
                      *  ***   *                                                  

consensus_5878#0      -
consensus_5878#1      A 565