cluster # 5898

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Oryza sativa
cluster # 5898 cluster # 5898 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5898#0 length = 1242 sequences # 1

consensus_5898#1 length = 563 sequences # 2

consensusID : consensus_5898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1242
fasta sequence

                              [AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTCCTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAAGGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCAGCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACAGAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAGCCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAGGCCTAGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCCGATGAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAGAAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAGGCCAAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCGCTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTGACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATTCGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAATGTGTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG]

[+] EMBL AK060392             [AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTCCTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAAGGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCAGCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACAGAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAGCCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAGGCCTAGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCCGATGAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAGAAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAGGCCAAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCGCTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTGACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATTCGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAATGTGTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG]




>consensus_5898#0
AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTC
CTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAA
GGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCA
GCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACA
GAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAG
CCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAGGCCT
AGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCCGAT
GAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAA
AAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTC
CCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATG
AAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTA
TTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTG
CCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTT
GAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCT
AGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAGAAG
CAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAGGCC
AAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCGCTG
GAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTGACG
GCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATTCGG
GTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAATGT
GTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG

consensusID : consensus_5898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence

                              [GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTACTTGGGCAACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTACTAAAAAACTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGT]

[-] EMBL CF303399             [GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTACTTGGGCAACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTACTAAAAAACTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGT]
[-] EMBL CF304852             [                                                                                                              TACTAAAAAACTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGT]




>consensus_5898#1
GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTACTTGGGC
AACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTACTAAAAAA
CTTTTGTTGAATTTTAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCACAAAAGAT
ACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCTGTCCCAAG
CATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGCATGAAATT
TGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCTTTATTTCC
CCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGGGTGCCACC
AGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCA
AGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATATTCTAGTGA
GGCTGAAGCAATGGCAGATACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5898#0      AAGTTAATCTTGAACGTTGAGTGCCACAGGCCCAGGAATAAGATTGAAAGGTCCGATTTC 60
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      CTGGTACAGGAACAGGAAGATCAAGGTGGTAACCAGACTATAAGAATGCAACCTCAACAA 120
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      GGTAGATTTTTTGGAAGAGAGGAAATGAGCAATGGAGTAGAATACGATGCTGCATATGCA 180
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      GCCACAGTGGCTGCGGTAGCGTATGCTATTGCAGCAAAAGAGGAGGAGAAACAGGCAACA 240
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      GAAGAGACCCGTGTGAAAAAGAAGTTAACATCTGAAAAGAAGCCTGTCGCGAACGATGAG 300
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      CCTTCGACCACACCAACTCTCAAACTACCACCCAACAGACAAGGAATCTTGAAAAG---G 357
consensus_5898#1      -------GTACCCGATGAAGAAGACGACGGACTAGAAGGTACAAGATTCAAAACAACTTA 53
                               ** * *      * ** **   * *  **  *    **    ** *     

consensus_5898#0      CCTAGGCAAACCGAGGGGAGCAGAATCACAAGGCGGTTTAGTGGTAAGGAGATTGTACCC 417
consensus_5898#1      CTTGGGCAACAATGATATATTACTGTAGCACAACCTGCAACCAGCTATACCATTATGTAC 113
                      * * *****         *  *   *  **   *     *   *  *    *** *   *

consensus_5898#0      GATGAAGAAGACGACGGACTAGAAGCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCA 477
consensus_5898#1      TAAAAAACTTTTGTTGAATTTTA-GCTAATGTATCGGTGAGGAGGCCGGTGAGAACGGCA 172
                       *  **      *  * * *  * ************************************

consensus_5898#0      CAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCT 537
consensus_5898#1      CAAAAGATACCAGAAGGTGGAATTTCAGGTCAAAATATGGTAGGGAAGGTTCTTGATTCT 232
                      ************************************************************

consensus_5898#0      GTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGC 597
consensus_5898#1      GTCCCAAGCATAAGAAAGGCTCCGAGCTTCGCCAAGCCTTTACCAGAAAAGAAGGGGAGC 292
                      ************************************************************

consensus_5898#0      ATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCT 657
consensus_5898#1      ATGAAATTTGAGCAAGAGCAGGCAATCCCAACGGTGCCACCGAATGTTAGGCCGACAGCT 352
                      ************************************************************

consensus_5898#0      TTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGG 717
consensus_5898#1      TTATTTCCCCGAGAGAAGAAAGAGAGCAAGAAATTTGATCAAGACCAGGCAATCCCAAGG 412
                      ************************************************************

consensus_5898#0      GTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAG 777
consensus_5898#1      GTGCCACCAGATGTTAGGCCAACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAG 472
                      ************************************************************

consensus_5898#0      TTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATAT 837
consensus_5898#1      TTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTTCCGCGCCGACGAGTTCATAT 532
                      ************************************************************

consensus_5898#0      TCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAG 897
consensus_5898#1      TCTAGTGAGGCTGAAGCAATGGCAGATACGT----------------------------- 563
                      *******************************                             

consensus_5898#0      AAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAG 957
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      GCCAAACGCCAGATGGAGTTGAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCG 1017
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      CTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGGTGGCCGCAGCATCAAGGCTG 1077
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      ACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATT 1137
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      CGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAA 1197
consensus_5898#1      ------------------------------------------------------------
                                                                                  

consensus_5898#0      TGTGTAGTGGATGTGGCTGTTTCAAATGAAATTTATGTGAAATTG 1242
consensus_5898#1      ---------------------------------------------