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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1383 fasta sequence
[CGCATTCGAAAACCTCGTCGCCGATCTCCTCCTCCTCCTCGCGAGATCTTCGAGGCTTCTCTCTTCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGAGATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGATCCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTCGGGGGCGGTGGCGTGCCAGCTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAAGGTCAACTTCGACGCCAAGACGGAGTACGA-GATGATCCAGAAC-TAC-AAAGTTCTTCAGGACGTCTTCAACAAGCTCAAGATCACCAAGCACATCGAA-GTGAACAAGCTTACCAAGGGAAGGCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGGAGGCTTCATGAACAGTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGAGACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCCACCCACAAAGCACAGGCATCATCTCATGGTGCCAAGAAGGCCAATGGGCATGCGCCGAACGCCCCTCCGTCACGGAGCGCAAAGCCGTCTCCCGCAAACTCCGCTGGACCAGCTTATGATGAACAGATCACTGAGCTGAAGCTGCTCGTCGATAGTCTCGAGAAAGAAAGAGATTTCTATTTCTCCAAGCTGAGGGATGTGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGATTGTCAACGCGATTCATAAGGTACTCTACGCTGCGGAGGATGACCCCTCGATGGTGGCGGAGGCGCAGGCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAATCCTGGAGGCGTCGGAGGAGAGGCCGGCGAAGCAGGAGGTGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGTTCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTTCCTTTGCGTTGTATTGTTGGTGGTATAATGTGTGTGCTATTTTCTTGCCTTCGGATGGTGGTTGTGCCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCAAATAGTTCGGTGATTTATGGTTAAAAAAAAAA]
[+] EMBL AK108732 [CGCATTCGAAAACCTCGTCGCCGATCTCCTCCTCCTCCTCGCGAGATCTTCGAGGCTTCTCTCTTCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGAGATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGATCCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTCGGGGGCGGTGGCGTGCCAGCTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAAGGTCAACTTCGACGCCAAGACGGAGTACGA GATGATCCAGAAC TAC AAAGTTCTTCAGGACGTCTTCAACAAGCTCAAGATCACCAAGCACATCGAA GTGAACAAGCTTACCAAGGGAAGGCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGGAGGCTTCATGAACAGTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGAGACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCCACCCACAAAGCACAGGCATCATCTCATGGTGCCAAGAAGGCCAATGGGCATGCGCCGAACGCCCCTCCGTCACGGAGCGCAAAGCCGTCTCCCGCAAACTCCGCTGGACCAGCTTATGATGAACAGATCACTGAGCTGAAGCTGCTCGTCGATAGTCTCGAGAAAGAAAGAGATTTCTATTTCTCCAAGCTGAGGGATGTGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGATTGTCAACGCGATTCATAAGGTACTCTACGCTGCGGAGGATGACCCCTCGATGGTGGCGGAGGCGCAGGCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAATCCTGGAGGCGTCGGAGGAGAGGCCGGCGAAGCAGGAGGTGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGTTCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTTCCTTTGCGTTGTATTGTTGGTGGTATAATGTGTGTGCTATTTTCTTGCCTTCGGATGGTGGTTGTGCCACAGCATTTGTGGCACTTTTGAGACAAT ]
[+] EMBL C91789 [ GTCGCCGATCTCCTCCTCCTCCTCGCGAGANCTTCGAGGCTTCTCTCTNCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGAGATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGATCCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTCGGGGGCGGTGGCGTGCCAACTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAAGGTCAACTTCGACGCCAAGACGGAGTNCGANAATGATCAAGAACTTACAAAATTTTTTCAGGACGTTTTCAANAAGCTCAAGATC NCAAGCACATCGAATTTAAACAAGTTTCCAAAGGGAAAGGCCCTTGAAAATTTG ]
[+] EMBL AU166110 [ anCCCAATCCTGGAGGCGTCGGAGGAGAGNCCGGCGAAGCAGGAGGCGCACAAGAGGAAGAGCATCTCCGACCTGGAGCTGGAGGAGTTCGGCATGGCGTCCAGCTCGAGGCAGAGGCTCTCCGACATCTCCGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAATGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTGCTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTTTNCCTTTGCGTTGTATTGTTGGTGGTATAATGTGTGTGCTATTTTCTTG CTTCGGATGGTGGTTGTGCCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCAAATAGTTCGGTGATTTATGGTTAAAAAAAAAA]
consensusID : consensus_6154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[AGAACCCCCCCCCCCCCCCCGTTTTATTAGCCCCACAAAGGGGGGGGCCTCTTCCCATATAGGNGGGCACAATTGTGGAAAGGGGCTCCGGGGNNNNNNNNNNNNNNNNNNCGACGCGGGGAGGGNNNNNNNNNNNNNNNNNNNNNNNAGTAGAGCGCCAAGGTTTTCCCAATCCCGCGCTTGTNNNTAAGCAGCGNNNNNNAAAGAGGGTTCCAGCTCCTTTAAGGGCGAATGGGGCCCGGGCCCCCCCCTAAAGGGGGCGGGGTTAAATAAGCTTATTAAGGTAACCANNNNNNNNNACGAAGAAAAGCATTTCCGAACTTGAGCTGGAGGAATTTNGGCATGGCGTCCAAGCTCGAGGCAAAGCTTTTCCGACATTTCCGACGGGCAGCTGTGCGGATCACTTTTGACGAGCTTCNCTGAATGAATGNCTGAATGAATGAAGAACNCAGCCATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATAGCTCTCTATATCTCTTTCTATCATTTGGAGGATTTGTTTGTTGNNTGTTTCTCTTGCGGGTTATGGTGGTGGTATAATGTGTGTGCCAATATCTTTGCCTTCGGATGGTGGTTGTGGCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCTAAAAAAAAAAAAAAA]
[-] EMBL CA760346 [AGAACCCCCCCCCCCCCCCCGTTTTATTAGCCCCACAAAGGGGGGGGCCTCTTCCCATATAGGNGGGCACAATTGTGGAAAGGGGCTCCGGGGNNNNNNNNNNNNNNNNNNCGACGCGGGGAGGGNNNNNNNNNNNNNNNNNNNNNNNAGTAGAGCGCCAAGGTTTTCCCAATCCCGCGCTTGTNNNTAAGCAGCGNNNNNNAAAGAGGGTTCCAGCTCCTTTAAGGGCGAATGGGGCCCGGGCCCCCCCCTAAAGGGGGCGGGGTTAAATAAGCTTATTAAGGTAACCANNNNNNNNNACGAAGAAAAGCATTTCCGAACTTGAGCTGGAGGAATTTNGGCATGGCGTCCAAGCTCGAGGCAAAGCTTTTCCGACATTTCCGACGGGCAGCTGTGCGGATCACTTTTGACGAGCTTCNCTGAATGAATGNCTGAATGAATGAAGAACNCAGCCATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATAGCTCTCTATATCTCTTTCTATCATTTGGAGGATTTGTTTGTTGNNTGTTTCTCTTGCGGGTTATGGTGGTGGTATAATGTGTGTGCCAATATCTTTGCCTTCGGATGGTGGTTGTGGCACAGCATTTGTGGCACTTTTGAGACAATATTATTATGCTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6154#0 CGCATTCGAAAACCTCGTCGCCGATCTCCTCCTCCTCCTCGCGAGATCTTCGAGGCTTCT 60
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 CTCTTCTTCGATCTCTTCGATCCCCGTGGTGGTGGTGATCTGGTTCGCGGCGGCGGAGGA 120
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 GATGGCGGCGAGCAACATCGGGATGATGGACGGGGCCTACTTCGTGGGGCGGAACGAGAT 180
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 CCTGGCGTGGATCAACACCACCCTGCAGCTCGGCCTCTCCAAGGTCGAGGAGGCTGCGTC 240
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 GGGGGCGGTGGCGTGCCAGCTGATGGACGCGGCGCACCCGGGGGCGGTGCCGATGCACAA 300
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 GGTCAACTTCGACGCCAAGACGGAGTACGAGATGATCCAGAACTACAAAGTTCTTCAGGA 360
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 CGTCTTCAACAAGCTCAAGATCACCAAGCACATCGAAGTGAACAAGCTTACCAAGGGAAG 420
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 GCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGG 480
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 AGGCTTCATGAACAGTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGA 540
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 GACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCCACCCA 600
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 CAAAGCACAGGCATCATCTCATGGTGCCAAGAAGGCCAATGGGCATGCGCCGAACGCCCC 660
consensus_6154#1 ------------------------------------------------------------
consensus_6154#0 TCCGTCACGGAGCGCAAAGCCGTCTCCCGCAAACTCCGCTGGACCAGCTTATGATGAACA 720
consensus_6154#1 ---------------AGAACCCCCCCCCCCC--CCCCGTTTTATTAGCCCCACAAAGGGG 43
* * ** * *** * * *** * * *** *
consensus_6154#0 GATCACTGAGCTGAAGCTGCTCGTCGATAGTCTCGAGAAAGAAAGAGATTTCTATTTCTC 780
consensus_6154#1 GGGGCCTCTTCCCATATAGGNGGGC-ACAATTGTGGAAAGGGGCTCCGGGGNNNNNNNNN 102
* ** * * * * * * * * * ** *
consensus_6154#0 CAAGCTGAGGGATGTGGAGATCTTGTGCCAGAGCCCTGAAGTCGAGCATTTGCCGATTGT 840
consensus_6154#1 NNNNNNNNNCGACGCGGGGA----GGGNNNNNNNNNNNNNNNNNNNNNNNAGTAGAGCGC 158
** * ** ** * * * ** *
consensus_6154#0 CAACGCGATTCATAAGGTACTCTACGCTGCGGAGGATGACCCCTCGATGGTGGCGGAGGC 900
consensus_6154#1 CAAGGTT-TTCCCA----ATCCCGCGCTT--GTNNNTAAGCAGCGNNNNNNAAAGAGGGT 211
*** * *** * * * **** * * * * * **
consensus_6154#0 GCAGGCGATGATATCGCAGCAGCAGCAGAGTGAGCAGCCGATGCTGAGCCCAATCCTGGA 960
consensus_6154#1 TCCAGC--------TCCTTTAAGGGCGAATGGGGC--CCGGGCCCCCCCCTAAAGGGGGC 261
* ** * * ** * * ** *** * ** ** **
consensus_6154#0 GGCGTCGGAGGAGAG-GCCGGCGAAGCAGGAGGTGCACAAGAGGAAGAGCATCTCCGACC 1019
consensus_6154#1 GGGGTTAAATAAGCTTATTAAGGTAACCANNNNNNNNNACGAAGAAAAGCATTTCCGAAC 321
** ** * ** * * * * ** *** ***** ***** *
consensus_6154#0 TGGAGCTGGAGGAGTT-CGGCATGGCGTCCA-GCTCGAGGCAGAGGCTCTCCGACATCTC 1077
consensus_6154#1 TTGAGCTGGAGGAATTTNGGCATGGCGTCCAAGCTCGAGGCAAAGCTTTTCCGACATTTC 381
* *********** ** ************* ********** ** * ******** **
consensus_6154#0 CGACGTGCAGCTGTGCGGATCACCTCTGACGAGCTTCACTTGAATGAATGACTGAATGAA 1137
consensus_6154#1 CGACGGGCAGCTGTGCGGATCACTTTTGACGAGCTTCNCT-GAATGAATGNCTGAATGAA 440
***** ***************** * *********** ** ********* *********
consensus_6154#0 TGAAGAACACAGCAATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATTG 1197
consensus_6154#1 TGAAGAACNCAGCCATTGGGGCACAATTTGCAGCTGTGACATTGGATTAGTACTAGATAG 500
******** **** ******************************************** *
consensus_6154#0 CTCTCTATATCTCTTTCTTTCTTTTGTTGGATTTGTTTGTTGGTT--TTCCTTTGCGTTG 1255
consensus_6154#1 CTCTCTATATCTCTTTCTATCATTTGGAGGATTTGTTTGTTGNNTGTTTCTCTTGCGGGT 560
****************** ** **** ************** * *** *****
consensus_6154#0 TATTGTTGGTGGTATAATGTGTGTGCTATTTTCTT-GCCTTCGGATGGTGGTTGTGCCAC 1314
consensus_6154#1 TATGGT-GGTGGTATAATGTGTGTGCCAATATCTTTGCCTTCGGATGGTGGTTGTGGCAC 619
*** ** ******************* * * **** ******************** ***
consensus_6154#0 AGCATTTGTGGCACTTTTGAGACAATATTATTATGCAAATAGTTCGGTGATTTATGGTTA 1374
consensus_6154#1 AGCATTTGTGGCACTTTTGAGACAATATTATTATGCTAAAAAAAAAAAAAAA-------- 671
************************************ ** * *
consensus_6154#0 AAAAAAAAA 1383
consensus_6154#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||