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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1103 fasta sequence
[CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTCCGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT-GGGGGTAGC-CTGGAAGGCAAAGATTGAG-AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGAC-AAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTGGTAATGTGCTACGGAGCTATGCC]
[+] EMBL AK070349 [CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTCCGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT GGGGGTAGC CTGGAAGGCAAAGATTGAG AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGAC AAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAACAAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATACGTGGTAATGTGCTACGGAGCTATGCC]
[+] EMBL CF323157 [ ctcgtgccGAGAGGAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGAGGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGTCGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAAGGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAAGCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGATGGGGGGTAGCNTTGGAAGGCAAAGATTGAGAAAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTA ]
[+] EMBL CA999897 [ AAGGTAACCACCCATGCTCTTCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAAAATGGATACTGAGAT GGGGGTAGC CTGGAAGGCAAAGATTGAG AAGATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAAACAGCTGAAGCTGCTTCTAATGTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATCATTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCAGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCAGTGTATGGTAAGCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCAGTTGCTGAA AAAATCAGTTAGGTGGAAATTTTGTACACTTACTGA ]
consensusID : consensus_6264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCT]
[+] EMBL BI805622 [TGTACTCCAAATAACTCGACATACTCCTCTTGCAGGTCCAAAGGAGAATCACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCATATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGAGTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAATTTTGTATCTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6264#0 CCTCTCCGCATCCCACAGCCACAAGCGGCGCCGCACCACTTCGTCCTCAACCAAAACCTC 60
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 CGCCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGAGTAGGGAGAGTAAGCGGGGAGAG 120
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GAAGATGTCGTTCCGTGCGCGGGAGATGTACAAGAAGGTGGTGCGGCGCGTGGGCGGCGA 180
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GGGGAAGCTGCCGGCGGAGCTGATGGCGTCGGTGAAGAACTTGCTGCCTGACAGCAAGGT 240
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 CGTCATGGGGAGGGCCAAGCGCGGCATCTACGCCGGACGCCACATCCAGTTCGGCAACAA 300
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GGTCTCCGAGGACGGTGGCAACAAGTCAAGGCGAACATGGAAGCCAAATGTTCAGGAGAA 360
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GCGTCTTTTTAGCTATATTCACGACCGGCACATTAGGGTCAAGGTAACCACCCATGCTCT 420
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 TCGGTGCATTGACAAAGCTGGTGGGATAGACGAATACCTCCTGAAGACACCTTACAACAA 480
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 AATGGATACTGAGATGGGGGTAGCCTGGAAGGCAAAGATTGAGAAGATGTATTCACAGCT 540
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 AGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTT 600
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 TGAGGAGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAA 660
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GCAGACTCAGCTAGAAGCTGGTAACGCTGGTGGTGACAAACAGCTGAAGCTGCTTCTAAT 720
consensus_6264#1 ------------------------------------------------------------
consensus_6264#0 GTTGCAGTGAAGTCCTAGCTTGGACCTATCTGCTCGTCATGATTGGTCAAAAGGAGAATC 780
consensus_6264#1 -------TGTACTCCAAA--TAACTCGACATACTCCTCTTG-CAGGTCCAAAGGAGAATC 50
** * *** * * * * * *** ** ** **** ***********
consensus_6264#0 A-TTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCA--GGGATCA 837
consensus_6264#1 ACTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCCACGGGATCA 110
* ************************************************ *******
consensus_6264#0 TATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGC-AGTGTATGGTAAGC-TGGA 895
consensus_6264#1 TATGCTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCCAGTGTATGGTAAGCCTGGA 170
**************************************** ************** ****
consensus_6264#0 GTCTAATACTATCAGCATGTGGGTGTTGTAAGC-AGTTGCTGAACAAAATCAGTTAGGTG 954
consensus_6264#1 GTCTAATACTATCAGCATGTGGGTGTTGTAAGCCAGTTGCTGAACCAAATCAGTTAGGTG 230
********************************* *********** **************
consensus_6264#0 GAAATTTTGTACACTTACTGAATAC-TCGTGTCAGAGTTCAGATAACTTTCTTGTAGAAT 1013
consensus_6264#1 GAAATTTTGTACACTTACTGAATACCTCGTGTCAGAGTTCAGATAACTTTCTTGTAGAAT 290
************************* **********************************
consensus_6264#0 TTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGG 1073
consensus_6264#1 TTTGTATCTTCT------------------------------------------------ 302
************
consensus_6264#0 ATACGTGGTAATGTGCTACGGAGCTATGCC 1103
consensus_6264#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||