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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1383 fasta sequence
[GTGGGCCCACACTGTCAGCCTCTCTCTCTCTCCCTCTACTCCCACCATCCGGGCGAAATCACTCGAGCTTCACACCTGTGTCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGAAGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGTTGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGAGAGGAAGTGGAGGGAGGAAGAAAATTTGTCATTCGCCCGTACACACCTATCTCTGATCCAGATTCTAAAGGATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAGTCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCACGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAGATCCATTCACAG]
[+] EMBL AK071324 [GTGGGCCCACACTGTCAGCCTCTCTCTCTCTCCCTCTACTCCCACCATCCGGGCGAAATCACTCGAGCTTCACACCTGTGTCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGAAGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGTTGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGAGAGGAAGTGGAGGGAGGAAGAAAATTTGTCATTCGCCCGTACACACCTATCTCTGATCCAGATTCTAAAGGATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAGTCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCACGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAGATCCATTCACAG]
[+] EMBL AK104306 [ TCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGGGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGAAGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGTTGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGGGAGGAAGTGGAGGGAGGAAGAAAATTTGTCATTCGCCCGTACACACCTATCTCTGATCCAGATTCTAAAGGATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAGTCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCCCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAACTAGATAGACTTGCCAGTAGCTAACCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAG ]
[+] EMBL CA998108 [ CAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGC ]
consensusID : consensus_6297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCCGACCAGTGGCTAGAGGTTCAGCCCCCGGAGAAGGCAACAGTTAGCCACCATTCACAATTATTTAGATTTTCGTTTGACCCCTCTACCAAGTTGGGTCTGGATGTTGCCTCCTGTCTCATAACCAGGGGCCCCCTAGGAAAAGGAATTGGAGGGAGGAAGAAATTTTGTCCTTCCCCCCGTACCCCCCTTCTCCGCTCTCAATTCTAAAGGATTTTTTGAACTCCTATTCAGGTTTATT]
[+] EMBL CA753505 [GATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCCGACCAGTGGCTAGAGGTTCAGCCCCCGGAGAAGGCAACAGTTAGCCACCATTCACAATTATTTAGATTTTCGTTTGACCCCTCTACCAAGTTGGGTCTGGATGTTGCCTCCTGTCTCATAACCAGGGGCCCCCTAGGAAAAGGAATTGGAGGGAGGAAGAAATTTTGTCCTTCCCCCCGTACCCCCCTTCTCCGCTCTCAATTCTAAAGGATTTTTTGAACTCCTATTCAGGTTTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6297#0 GTGGGCCCACACTGTCAGCCTCTCTCTCTCTCCCTCTACTCCCACCATCCGGGCGAAATC 60
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 ACTCGAGCTTCACACCTGTGTCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCT 120
consensus_6297#1 -----------------------GATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCT 37
*************************************
consensus_6297#0 CGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGC 180
consensus_6297#1 CGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGC 97
************************************************************
consensus_6297#0 TCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAG 240
consensus_6297#1 TCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAG 157
************************************************************
consensus_6297#0 CGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGG 300
consensus_6297#1 CGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGG 217
************************************************************
consensus_6297#0 ATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGA 360
consensus_6297#1 ATGCCGCTGCTAAAGTTGCGCTTAACCCCGACCAGTGGCTAGAGGTTCAGCCCCCGGAGA 277
**************************** *** *********** * *** ** *****
consensus_6297#0 AGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGT 420
consensus_6297#1 AGGCAACAGTTAGCCACCATTCACAATTATTTAGATTTTCGTTTGACCCCTCTACCAAGT 337
***************** ******************************* ***** ****
consensus_6297#0 TGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGAGA-GGAAGTGGAG 479
consensus_6297#1 TGGGTCTGGATGTTGCCTCCTGTCTCATAACCAGGGGCCCCCTAGGAAAAGGAATTGGAG 397
******* ******** ** *********** **** ** ***** * **** *****
consensus_6297#0 GGAGGAAGAAAATTTGTCATTCGCCC-GTACACACCTATCTCTGATCCAGATTCTAAAGG 538
consensus_6297#1 GGAGGAAGAAATTTTGTCCTTCCCCCCGTACCCCCCT-TCTCCGCTCTCAATTCTAAAGG 456
*********** ****** *** *** **** * *** **** * ** **********
consensus_6297#0 ATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAG 598
consensus_6297#1 ATTTTTTGAACTCCTATTCA-GGTTTATT------------------------------- 484
** ****** ** *** *** *******
consensus_6297#0 TCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCTCAGATATAGCCC 658
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 AAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCA 718
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 GGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCACGTTTCCTTAATTTATGC 778
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 CAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTA 838
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 TCCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGT 898
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 TGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCT 958
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 GATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGA 1018
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 TAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGT 1078
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 ATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCG 1138
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 CCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTG 1198
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 GGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTT 1258
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 TTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCT 1318
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 TCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAGATCCATT 1378
consensus_6297#1 ------------------------------------------------------------
consensus_6297#0 CACAG 1383
consensus_6297#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||