cluster # 6369

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Oryza sativa
cluster # 6369 cluster # 6369 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6369#0 length = 716 sequences # 2

consensus_6369#1 length = 434 sequences # 1
consensus_6369#2 length = 385 sequences # 1

consensusID : consensus_6369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 716
fasta sequence

                              [TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAATCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCCGCCTCCCGCCGGCCTCCAGCGCCGGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGCCGTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG]

[+] EMBL CF325926             [TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAATCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGCCGCTCTAGC                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU182641             [                                                                                                                                                                                                                                                                                                   AANCAGAAAACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCCGCCTCCCGCCGGCCTCCAGCGCCGGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGCCGTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG]




>consensus_6369#0
TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAA
TCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGC
ATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCT
CGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATG
CCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAA
ACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCG
CTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCCGCCTCCCGCCGGCCTCCAGCGCC
GGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGCC
GTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAAG
GGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTT
CGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTC
CCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG

consensusID : consensus_6369#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [CCACAAAAAATTAAATTNAAAAAAAACAGAAACCTTAATTGGTCGTGCCGCGCTCTAACTCGTGGCGCAGTGNTGCGTCGCCGGTTCNGCCTCGTNATCGTTGTCAGGTGGCGCGCCGCCTCCCGCGGCCTCCAACGCCGGATCCGTGCGGGGGCAGGCGGCCGGCCACCGGATCTAGCGGAAGACGCCGCGTGCCGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGGCA]

[-] EMBL C74063               [CCACAAAAAATTAAATTNAAAAAAAACAGAAACCTTAATTGGTCGTGCCGCGCTCTAACTCGTGGCGCAGTGNTGCGTCGCCGGTTCNGCCTCGTNATCGTTGTCAGGTGGCGCGCCGCCTCCCGCGGCCTCCAACGCCGGATCCGTGCGGGGGCAGGCGGCCGGCCACCGGATCTAGCGGAAGACGCCGCGTGCCGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGGCA]




>consensus_6369#1
CCACAAAAAATTAAATTNAAAAAAAACAGAAACCTTAATTGGTCGTGCCGCGCTCTAACT
CGTGGCGCAGTGNTGCGTCGCCGGTTCNGCCTCGTNATCGTTGTCAGGTGGCGCGCCGCC
TCCCGCGGCCTCCAACGCCGGATCCGTGCGGGGGCAGGCGGCCGGCCACCGGATCTAGCG
GAAGACGCCGCGTGCCGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCC
GTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCC
GCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTG
TGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTG
TGGAGAAGGAGGCA

consensusID : consensus_6369#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAAGCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGANCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGNCGCTCTAGCCTCGTCGGNGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCGCTTCTCCGCCGGCCTCCANCGCCGGAATCCG]

[-] EMBL AU029395             [TTTTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAAGCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGANCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGNCGCTCTAGCCTCGTCGGNGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCGCTTCTCCGCCGGCCTCCANCGCCGGAATCCG]




>consensus_6369#2
TTTTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTTAGCACTT
GACACACACACACCACGCATACACTACTACACAAAGCGTTTTTTCGTGCGGTCGATCGGA
TTTTTGCATGCGGANCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCT
CTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATT
TCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGNCGCTCTAGCCTCGTCGGNGG
CGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCGCTTCTC
CGCCGGCCTCCANCGCCGGAATCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6369#0      TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAA 60
consensus_6369#1      ------------------------------------------------------------
consensus_6369#2      ------------------------------------------------------------
                                                                                  

consensus_6369#0      TCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGC 120
consensus_6369#1      ------------------------------------------------------------
consensus_6369#2      ------------------------------------------------------------
                                                                                  

consensus_6369#0      ATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCT 180
consensus_6369#1      ------------------------------------------------------------
consensus_6369#2      ------------------------------------------------------------
                                                                                  

consensus_6369#0      CGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATG 240
consensus_6369#1      ------------------------------------------------------------
consensus_6369#2      ------------------------------------------------------------
                                                                                  

consensus_6369#0      CCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAA 300
consensus_6369#1      -------------------------CCACAAAAAATTAAA---TTNAAAAAAAACAGAAA 32
consensus_6369#2      ----------------------------------------------------------TT 2
                                                                                  

consensus_6369#0      ACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCG 360
consensus_6369#1      --CCTTAATTGG-TCGT-GCCGC-GCTCTAAC-TCGT-GGCG-CAGTGNTG-CGTCGCCG 83
consensus_6369#2      TTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTT-AGCACTTG 61
                          *   **   *  *     * *  * *    *    * *    ** *   *     *

consensus_6369#0      CTCCCGCCTCGTCATCGTTGTCGTCGGCG-GCGGCGCCGCCTCCCGCCGGCCTCCAGCGC 419
consensus_6369#1      GTTCNGCCTCGTNATCGTTGTCA--GGTG-GCG-CGCCGCCTCCCGC-GGCCTCCAACGC 138
consensus_6369#2      ACACACACACACCA-CGCATACACTACTACACAAAGCGTTTTTTCGT--GCGGTCGAT-- 116
                         *   * *   * **    *         *   **    *  **   **   *     

consensus_6369#0      CGGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGC 479
consensus_6369#1      CGGATCCGTG-CGGGGGCAGG-CGGCCGGCCACCGGATCTAGCGGAAGACG-CCGCGTGC 195
consensus_6369#2      CGGATTTTTG-CATGCGGANCTCGGCCCGTC--TGGAACAAATCGCTTGGG-AAAATCAC 172
                      *****   ** *  * * *   ***** * *   *** * *   *     *        *

consensus_6369#0      CGTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAA 539
consensus_6369#1      CGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCCGTCGCCACCGGGGAA 255
consensus_6369#2      GATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAA 232
                        *  ** *  *** *          *    ** **      *      ***      **

consensus_6369#0      GGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCT 599
consensus_6369#1      GGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCT 315
consensus_6369#2      TTAAGATTTCAAAAAAAAACAGAAAACCC-TAGATTGGGTC-GTCGCCGNCGCTCTAGCC 290
                         **      *       * *    *** *      * ** * ****   ** **  * 

consensus_6369#0      TCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCT 659
consensus_6369#1      TCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCT 375
consensus_6369#2      TCGTCG-GNGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCG 349
                      *** **   **  * ** ** * *** *  * * * **      **   ** ** ** * 

consensus_6369#0      CCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG-- 716
consensus_6369#1      CCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGGCA 434
consensus_6369#2      GCGCGCTTC--TCCGCCGGCCTCCANC--GCCGGAATCCG------------------- 385
                       * * * **   * ** * *  * * *   **    ***