cluster # 6372

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Oryza sativa
cluster # 6372 cluster # 6372 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6372#0 length = 360 sequences # 2

consensus_6372#1 length = 353 sequences # 2

consensusID : consensus_6372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 360
fasta sequence

                              [GCGGTAGAGTTTGCTAGGATCGATTCAGCAATGGCAGCGGTAGACGAGCACTAGTCCTCGGNGCCGTCGTCGTCTGNGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGG-CCGTCGGCGACCTCGACGGCGACGNCGCCTTCAGCGTNCCCCTCGCCGCCGACGACCTTCACGGCGCCGCNACTTCTTTTCGCAATTCANAACGCGGAGANAACA]

[+] EMBL AU197328             [GCGGTAGAGTTTGCTAGGATCGATTCAGCAATGGCAGCGGTAGACGAGCACTAGTCCTCGGNGCCGTCGTCGTCTGNGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGG CCGTCGGCGACCTCGACGGCGACGNCGCCTTCAGCGTNCCCCTCGCCGCCGACGACCTTCACGGCGCCG                                    ]
[+] EMBL C73951               [         TTTGCTAGGATCGATTCAGCAATGGCAGCGGTANACGAGCACTAGTCCTCGGCGCCGTCGTCGTCTNCGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGGCCCGTCGGCGACCTCGACGGCGACGGCGCCTTCAGCGTGCCCCTCGCCGCCGACGACCTTCACGGCGCCGCNACTTCTTTTCGCAATTCANAACGCGGAGANAACA]




>consensus_6372#0
GCGGTAGAGTTTGCTAGGATCGATTCAGCAATGGCAGCGGTAGACGAGCACTAGTCCTCG
GNGCCGTCGTCGTCTGNGCCGCCGTCGTGATGGCTGTCACCGCCGCGGCGGACGGCGAGG
CGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAGTGCGGTGGCTGCTCCAGGAAGAACATGA
AGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAGGAACGGCGACGGCG
AGTACGAGAGCAAGGCCGTCGGCGACCTCGACGGCGACGNCGCCTTCAGCGTNCCCCTCG
CCGCCGACGACCTTCACGGCGCCGCNACTTCTTTTCGCAATTCANAACGCGGAGANAACA

consensusID : consensus_6372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 353
fasta sequence

                              [CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGCAGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGAACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGAGCAAGGCCATCGGCGACC-TCGACGGCGACGGCGCC-TTCAGCGTGCCCCT-CGCCGCTGACGACTTCCACGGCGCCGCGACTTGCTTCGCGANTTGCACAG]

[+] EMBL AU065656             [CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGCAGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGAACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGAGCAAGGCCATCGGCGACC TCGACGGCGACGGCGCC TTCAGCGTGCCCCT CGCCGCTGACGACTTCCACGGCGCCGCGACTTGCTTCGCGANTTGCACAG]
[+] EMBL C91892               [            CACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGCAGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGGACGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGANCAAGGNCATCGGCGACCTTGGANGGCGACGGCGCCTTTCAGCGTGCCCCTNCGC                                               ]




>consensus_6372#1
CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTGAGGATTGATTCAGCAATGGC
AGATGTAGCACGAGCGCTACTCTTCGCCGCCCTCGTGATGGCTGTCACCGCCGCTGCGAA
CGGCGAGGCGGCGGCGATCGTCGTCGGCCAGGCCAAGTGCGGCGAGTGCACCAGGAAGAA
CATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTGGCGATCAAGTGCAAGAACAGCGA
CGGTGTGTACGAGAGCAAGGCCATCGGCGACCTCGACGGCGACGGCGCCTTCAGCGTGCC
CCTCGCCGCTGACGACTTCCACGGCGCCGCGACTTGCTTCGCGANTTGCACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6372#0      ---------------------------GCGGTAGAGTTTGCTAGGATCGATTCAGCAATG 33
consensus_6372#1      CTAGCCTCTTGCCACATAGTCCAAATAACAACAGAGTTTG--AGGATTGATTCAGCAATG 58
                                                  *   ********  ***** ************

consensus_6372#0      GCAGCGGTAG-ACGAGCACTAGTCCTCGGNGCCGTCGTCGTCTGNGCCGCCGTCGTGATG 92
consensus_6372#1      GCAGATGTAGCACGAGCGCTACTCTTCG------------------CCGCCCTCGTGATG 100
                      ****  **** ****** *** ** ***                  ***** ********

consensus_6372#0      GCTGTCACCGCCGCGGCGGACGGCGAGGCGGCGGCGGCGGTCGTCGTCGGCTTGGCCAAG 152
consensus_6372#1      GCTGTCACCGCCGCTGCGAACGGCGAGGCGGCGGCGA---TCGTCGTCGGCCAGGCCAAG 157
                      ************** *** *****************    ***********  *******

consensus_6372#0      TGCGGTGGCTGCTCCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTG 212
consensus_6372#1      TGCGGCGAGTGCACCAGGAAGAACATGAAGGCGCAGGATGCTTTCAAGGGTCTCCAGGTG 217
                      ***** *  *** ***********************************************

consensus_6372#0      GCGATCAAGTGCAGGAACGGCGACGGCGAGTACGAGAGCAAGGCCGTCGGCGACCTCGAC 272
consensus_6372#1      GCGATCAAGTGCAAGAACAGCGACGGTGTGTACGAGAGCAAGGCCATCGGCGACCTCGAC 277
                      ************* **** ******* * **************** **************

consensus_6372#0      GGCGACGNCGCCTTCAGCGTNCCCCTCGCCGCCGACGACCTTCACGGCGCCGCNACTTCT 332
consensus_6372#1      GGCGACGGCGCCTTCAGCGTGCCCCTCGCCGCTGACGACTTCCACGGCGCCGCGACTTGC 337
                      ******* ************ *********** ****** * *********** ****  

consensus_6372#0      TTTCGCAATTCANAACGCGGAGANAACA 360
consensus_6372#1      TT-CGCGANTTGCACAG----------- 353
                      ** *** * *   *  *