cluster # 6417

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Oryza sativa
cluster # 6417 cluster # 6417 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6417#0 length = 1103 sequences # 3

consensus_6417#1 length = 255 sequences # 1

consensusID : consensus_6417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1103
fasta sequence

                              [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT]

[+] EMBL AB056519             [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT]
[+] EMBL AB056517             [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGA GGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT]
[+] EMBL AB056518             [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGC         GGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT]




>consensus_6417#0
CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAG
ACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGC
GAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGG
GCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTG
TCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGC
GCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTC
TCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTC
CGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAG
TTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTG
GGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATG
ACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGG
CTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGG
CTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCC
TTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTC
TACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGC
CCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCC
GCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACC
GGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGAC
GACGTCGCCGCCGCCGCCGACGT

consensusID : consensus_6417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGACGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCGGAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGCAGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCGCTCNGGTTGCCCGGGCNGCGGAACAN]

[+] EMBL BE228707             [CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGACGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCGGAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGCAGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCGCTCNGGTTGCCCGGGCNGCGGAACAN]




>consensus_6417#1
CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGA
CGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCG
GAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGC
AGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCGCTCNGGTTGCC
CGGGCNGCGGAACAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6417#0      ------------------------------------------------------------
consensus_6417#1      CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGA 60
                                                                                  

consensus_6417#0      --CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAG-GCGGGTGCCG 57
consensus_6417#1      CGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCG 120
                        **********************************************  **********

consensus_6417#0      GAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGC 117
consensus_6417#1      GAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGC 180
                      ***** * ******************* *** ************* ******** ** **

consensus_6417#0      GGCGAGGACGCGGTGCCGGTGGTGGACGT-CGGGGCGGGCGACGCGGCGGCGCGGGTGGC 176
consensus_6417#1      AGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCG-CTCNGGTTGC 239
                       ** * *** * ***** ********* * *  *** *****  * *** * * *** **

consensus_6417#0      GCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCT 236
consensus_6417#1      CCGGGCNGCGGAACAN-------------------------------------------- 255
                       ***** ***** **                                             

consensus_6417#0      GCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGAT 296
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTT 356
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      CTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGA 416
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGA 476
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGC 536
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAG 596
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCT 656
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCC 716
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGG 776
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAG 836
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      CGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCT 896
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      CGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAG 956
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      CCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGC 1016
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      CACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACA 1076
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      CGACGACGTCGCCGCCGCCGCCGACGT 1103
consensus_6417#1      ---------------------------