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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1812 fasta sequence
[TCCCCTTCTCTCGGTTTCTCCCACAAACACAAAACCCTCTTCTCCCCTTCTCTGCTACCAGTAGTACACTACAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACCTCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGCCTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTCCAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCCGACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTCCGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCCGCGCCACGAGCGGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGCAGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAGGTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAACGGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGTCAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGCCAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCGACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTCCTGGACGC-TGGAGCACGAGGTGGCCTTCGGCCCGATCTGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATTGATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGACATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAAACATTTTGCAACTTCTCTTAGCTATGCACGAGCCATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAACCGCAGTCTAGAACAACACATACAACGATTACATTTTTGCATCATGCATATGCTCCTTATATCTAAGTTTTCTTCGATGTTATGTG]
[+] EMBL AK103561 [TCCCCTTCTCTCGGTTTCTCCCACAAACACAAAACCCTCTTCTCCCCTTCTCTGCTACCAGTAGTACACTACAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACCTCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGCCTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTCCAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCCGACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTCCGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCCGCGCCACGAGCGGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGCAGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAGGTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAACGGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGTCAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGCCAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCGACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTCCTGGACGC TGGAGCACGAGGTGGCCTTCGGCCCGATCTGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATTGATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGACATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAA ]
[+] EMBL AK064247 [ CAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACCTCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGCCTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTCCAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCCGACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTCCGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCTGCGCCACGAGCGGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGCAGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAGGTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAACGGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGTCAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGCCAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCGACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTCCTGGACGC TGGAGCACGAGGTGGCCTTCGGCCCGATCTGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATTGATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGACATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAAACATTTTGCAACTTCTCTTAGCTATGCACGAGCCATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAACCGCAGTCTAGAACAACACATACAACGATTACATTTTTGCATCATGCATATGCTCCTTATATCTAAGTTTTCTTCGATGTTATGTG]
[+] EMBL C27336 [ CTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGCATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTCGGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGCNACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCNTGCTGCCTGACCTTAACGACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCAAGGGCAAGCTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCCGACGACGACGAGGGCGGCGACTTCTTGACGCTTGGAGCACGAGGTTGGCTTtn ]
consensusID : consensus_6432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[TCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATTGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCCCGATGGAACCTTTTGTGGGCCCCCATTTTTTGACAAAATTCCTTGGGGAAACAATTTTTGTAAACTTCCTCCTANGGCAATTCAACNGNGCCCATNGGCTTATTTAATNAGTTCTAAGTGAAAATTGACTTTGAATCC]
[+] EMBL D43187 [TCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATTGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCCCGATGGAACCTTTTGTGGGCCCCCATTTTTTGACAAAATTCCTTGGGGAAACAATTTTTGTAAACTTCCTCCTANGGCAATTCAACNGNGCCCATNGGCTTATTTAATNAGTTCTAAGTGAAAATTGACTTTGAATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6432#0 TCCCCTTCTCTCGGTTTCTCCCACAAACACAAAACCCTCTTCTCCCCTTCTCTGCTACCA 60
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GTAGTACACTACAGGCTACTACTACTACTACTACTACACCAAATCACCGCGACCTCCACC 120
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 TCCACGCCTCCGCGCGCGATGCTCCGCCTCCGCCGCCTCACCGGCGCCGTCTCCGGCGGC 180
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 CTCGCCCGCTACCTCTCCACGCGCGCCGCGTCGCCGGCGCGGCCCCCGTGGGCGCTGCTC 240
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 CAGCTGTCGAAGATGGACCGGTCCGGGGCGTCGTCGCAGCCGGGCGCGTCGCTCCACGCC 300
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GACTACCCGCCGTGCGTCTCCTACCTCACCTTCGCCGCCAGCTTCGTCGACCCCCGCCTC 360
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 CGCCACGACGCCGAGTCCGAGATGTTCGGCACGGTCTCCACGGACGTCCGCGCCACGAGC 420
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GGCGACGGCCTCGTCCCCGTCCGCTTCTACGACTCCCGCAACCACCTCCCCACCGTCGGC 480
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 AGCCGCGGCGGCGAGCCGATGCGCGAGTGGGCCCTCGACGGCGTCGACCGCGACCCGGAG 540
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GTGACGCGGTTCATCTGCAACCCGCTCAGCGGCGAGATGTACCGCCTCCCCGACCTCAAC 600
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GGCACGAAGAAGACCTCGAGGTACCTCCACTTCGGGCTCCTCACCCAGTCCGATGCCGGT 660
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 CAGGGGCCGCCTGCTCGGTACGCGGTGGCGGAGCTCGACGGCAACCGCGAGGAAGACGGC 720
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 CAGGGGTGGCTCGTGCGGCGATTTCTCTCGGATTCCGGGGAGTGGGACAAGCTGGTGGGC 780
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 ATGCCGTCCCCATTGCCAGCCAGGAGGACGGTCGACATCGACCAGGAGGTGGTGGCCTTC 840
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GGCGACCGGCTATGGTGGGTCGATGCGAGCTGGGGCGCCGTCACCATCGACCCCTTCAGC 900
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GACCGGCCGGAGCTCCGGTTCGTCGAGCTGCCCAAGGAGAGCGTGCTGCCTGACCTTGAC 960
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GACGTGGTGATGCTAAGGGAGCTTGGCAAGTACAGGCGCATGGGGGTCAGCGAGGGCAAG 1020
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 CTCCGCTATGTCGAGGTGTCTTTGGGGAAGCAGTTCTTGATCAGGTCGTTCTCGCTCGCC 1080
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GACGACGACGAGGGCGGCGACTCCTGGACGCTGGAGCACGAGGTGGCCTTCGGCCCGATC 1140
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 TGGAAGGATGAGCACCACGCGTCGGTTCCCTTGGGTGGCATGCCAAGGATTGGGGCCATT 1200
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 GATCCACTGAACGCCAACATCGTGCACCTCATAGTTGGTGATCAGATGCTCAGCATAGAC 1260
consensus_6432#1 ------------------------------------------------------------
consensus_6432#0 ATGATTAAGGAGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTG 1320
consensus_6432#1 -----------------------------TCGTTTGGGTTGTGCTGACTTTCCCCTCCTG 31
*******************************
consensus_6432#0 CCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGC 1380
consensus_6432#1 CCTTGTGTACTCCCACCGTGGCTTGAATCAAGCCAGATTCCTGAAGGGATCCATTGGAGC 91
************************************************************
consensus_6432#0 AAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGAC 1440
consensus_6432#1 AAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGTTCATGTAGAC 151
************************************************************
consensus_6432#0 ATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACA 1500
consensus_6432#1 ATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACA 211
************************************************************
consensus_6432#0 GACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGG 1560
consensus_6432#1 GACGAGGTTTTTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGG 271
************************************************************
consensus_6432#0 GAAT-GCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCT-GATGAA---CTTTGTGGCCCCT 1615
consensus_6432#1 GAATTGCTGTGAAAAGTTTGGGTTTTGGGGCTTTCCCCGATGGAACCTTTTGTGGGCCCC 331
**** ******************************* **** * ******* ***
consensus_6432#0 CATTTT--GACAAATTCT----GGGAAACA--TTTTGCAACTTCTCTTAGCTATGCACGA 1667
consensus_6432#1 CATTTTTTGACAAAATTCCTTGGGGAAACAATTTTTGTAAACTTCCTC--CTANGGCAAT 389
****** ****** * ******** ***** ** * ** *** *
consensus_6432#0 GCCATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAAC 1727
consensus_6432#1 TCAACNGNGCCCATNGGCTTATT----TAATNAGTTCTAAGTGAAAATTGA-CTTTGAAT 444
* * ** * * * * * * * * * * **** *******
consensus_6432#0 CGCAGTCTAGAACAACACATACAACGATTACATTTTTGCATCATGCATATGCTCCTTATA 1787
consensus_6432#1 CC---------------------------------------------------------- 446
*
consensus_6432#0 TCTAAGTTTTCTTCGATGTTATGTG 1812
consensus_6432#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||