cluster # 6474

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Oryza sativa
cluster # 6474 cluster # 6474 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6474#0 length = 993 sequences # 3

consensus_6474#1 length = 503 sequences # 1

consensusID : consensus_6474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 993
fasta sequence

                              [AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATGTATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACTATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTAAGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTGCTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCACTAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGTTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTGAANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTATATCATTTCAGTTTTTGCATAACNNNNNNANAAA]

[+] EMBL CA766523             [AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATGTATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACTATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTAAGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTGCTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCACTAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGTTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTGAANAAGGTTTCAACTGAGCTGATTATAGNGCTGNAAAGCGGCTTAACACTATGTAAATCATGNGGTATGCNCCATGGATCA                                                                                                                                    ]
[+] EMBL CF196749             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAA GAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTATATCATTTCAGTTTTTGCATAACNNNNNNANAAA]
[+] EMBL CF330585             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGAGTACTATTGTTTATGTATATCATTTCAGTT                     ]




>consensus_6474#0
AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATG
TATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACT
ATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGC
TAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTA
AGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTG
CTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCAC
TAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAAT
GTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGT
AATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACC
TCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAA
TGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGT
TCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAG
TGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTG
AANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATCA
TGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTG
TGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTAT
ATCATTTCAGTTTTTGCATAACNNNNNNANAAA

consensusID : consensus_6474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTATAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAAAAAAAAAAAAA]

[+] EMBL AA753693             [ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTATAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAAAAAAAAAAAAA]




>consensus_6474#1
ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTA
TAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTT
CCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGA
AAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAG
CTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGAC
CCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGA
GGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGT
TATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCAC
TTGCCATGTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6474#0      AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATG 60
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      TATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACT 120
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      ATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGC 180
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      TAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTA 240
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      AGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTG 300
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      CTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCAC 360
consensus_6474#1      ------------------------------------------------------------
                                                                                  

consensus_6474#0      TAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAAT 420
consensus_6474#1      ------------------------------------------ACCCTTAANNCGANG--- 15
                                                                * **** *   *  *   

consensus_6474#0      GTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGT 480
consensus_6474#1      --GTAAGGGCAC-----CGGAAANNAGNT--------GNAAGGNGAATTTTTAAAGG-GT 59
                        *******  *      * * *  **          *  **     * * **  ** **

consensus_6474#0      AATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACC 540
consensus_6474#1      ATAAANCNAATTGNGNA-ANAAGT-ANCCCNGAAGNG-GTAGTTT-CTTCACCCAANACN 115
                      *  *  * ***** * * * * ** * *** **** * ******* * ******** ** 

consensus_6474#0      TCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTT-AAAAGGCTGTTCTTAGTAATGGGAA 599
consensus_6474#1      TCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAA 175
                      *** ** * * *********** *** * ***** *************************

consensus_6474#0      ATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAG 659
consensus_6474#1      ATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAG 235
                      **************************************************** *******

consensus_6474#0      TTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAA 719
consensus_6474#1      TTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAA 295
                      *********************** ******************** ********* *****

consensus_6474#0      GTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGT 779
consensus_6474#1      GTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGT 355
                      ******************************** ***************************

consensus_6474#0      GAANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATC 839
consensus_6474#1      GAAGA-GGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATC 414
                      *** * ******* *************** ******************************

consensus_6474#0      ATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTT 899
consensus_6474#1      ATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTT 474
                      ************************************************************

consensus_6474#0      GTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTA 959
consensus_6474#1      GTGCACTTGCCATGTAAA------AAAAAAAAAAA------------------------- 503
                      *****************       *  *  *****                         

consensus_6474#0      TATCATTTCAGTTTTTGCATAACNNNNNNANAAA 993
consensus_6474#1      ----------------------------------