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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATGGTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGAAGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAATTAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACATCTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG]
[+] EMBL AK108642 [ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATGGTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGAAGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAATTAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACATCTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG]
consensusID : consensus_648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGATGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACTAAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT]
[+] EMBL CA755236 [GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGATGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACTAAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_648#0 ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATA 60
consensus_648#1 ----------------------------GAGAGAGAAAGATCAAGAGCATATAATCTATA 32
********************************
consensus_648#0 TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA 120
consensus_648#1 TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA 92
************************************************************
consensus_648#0 TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC 180
consensus_648#1 TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC 152
************************************************************
consensus_648#0 ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG 240
consensus_648#1 ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG 212
************************************************************
consensus_648#0 AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT 300
consensus_648#1 AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT 272
************************************************************
consensus_648#0 GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG 360
consensus_648#1 GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG 332
************************************************************
consensus_648#0 CACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGAC 420
consensus_648#1 CACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGAC 392
****************************** ****************** **********
consensus_648#0 GACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATG 480
consensus_648#1 GACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATG 452
***************************** *** *** ******** **** ********
consensus_648#0 GTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGA 540
consensus_648#1 GTTTTGCAGAGCTCGGGGTGTAAGA-CGATGTGGAGGTGGACAC-TCGCTTCCCTTG-GA 509
********************** ** ****************** ******* **** **
consensus_648#0 AGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAAT 600
consensus_648#1 AGAAG-GGAAATTATTTA-ATGGTT-GTAG-AACTAAATGTTA--TTAACTCGGC--GAA 561
***** * ****** ** ** * * **** * *** *** * *** ****** *
consensus_648#0 TAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACAT 660
consensus_648#1 TAATCATTTTT--CCCCCTTTGA-CCTCCAGACTGGT----------------------- 595
*********** ********** *** * * *
consensus_648#0 CTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG 702
consensus_648#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||