cluster # 6485

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Oryza sativa
cluster # 6485 cluster # 6485 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6485#0 length = 434 sequences # 2

consensus_6485#1 length = 336 sequences # 2

consensusID : consensus_6485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 434
fasta sequence

                              [AGGCTGTTGTCCTCGACCAACCAGCCCAGCTTCNTGAGCCAGAAGGACATCGATGCCGCAAGAGAGGCTGATAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGAGAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGATTCTTTACCTGTACAGTAGCTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTCGCGGTTCATCTCCGATGCGTTGCAATGGATACACGCGAAAAGGATCTTGATCGTCTACGTAATAAAAAACACCNCCTCATATTTTTGTATCAGAGAACATGTGTGTAGCACTACGCACTTTGCAAGAGTTCTGCCTATTATTTCGGTAANAGAACTTCTTGATTTTTGTGTTCTGCNAAAAAAAAAAAAAAAAA]

[+] EMBL AU166503             [AGGCTGTTGTCCTCGACCAACCAGCCCAGCTTCNTGAGCCAGAAGGACATCGATGCCGCAAGAGAGGCTGATAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGAGAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGATTCTTTACCTGTACAGTAGCTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTCGCGGTTCATCTCCGATGCGTTGCAATGGATACACGCGAAAAGGATCTTGATCGTCTACGTAATAAAAAACACCNCCTCATATTTTTGTATCAGAGAACATGTGTGTAGCACTACGCACTTTGCAAGAGTTCTGCCTATTATTTCGGTAANAGAACTTCTTGATTTTTGTGTTCTGCNAAAAAAAAAAAAAAAAA]
[+] EMBL AK060632             [                                                            AGAGAGGCTGATAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGAGAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGATTCTTTACCTGTACAGTAGCTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTCGCGGTTCATCTCCGATGCGTTGCAATGGATACACGCGAAAAGGATCTTGATCGTCTACGTAATAAAAAACACCACCTCATA                                                                                                                 ]




>consensus_6485#0
AGGCTGTTGTCCTCGACCAACCAGCCCAGCTTCNTGAGCCAGAAGGACATCGATGCCGCA
AGAGAGGCTGATAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGA
GAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGATTCTTTACCT
GTACAGTAGCTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTC
GCGGTTCATCTCCGATGCGTTGCAATGGATACACGCGAAAAGGATCTTGATCGTCTACGT
AATAAAAAACACCNCCTCATATTTTTGTATCAGAGAACATGTGTGTAGCACTACGCACTT
TGCAAGAGTTCTGCCTATTATTTCGGTAANAGAACTTCTTGATTTTTGTGTTCTGCNAAA
AAAAAAAAAAAAAA

consensusID : consensus_6485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 336
fasta sequence

                              [TAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGAGAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGANTCTTTACCTGTACAAGTACTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTCGCGGTTCATCTCCGATNCGTTGCAATGGATACACGCGAAAAGGATCTTGANCGTCTACGTAATNAAAAACACCACCTCATATTTTTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]

[+] EMBL AU082277             [TAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGAGAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGANTCTTTACCTGTACAAGTACTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTCGCGGTTCATCTCCGATNCGTTGCAATGGATACACGCGAAAAGGATCTTGANCGTCTACGTAATNAAAAACACCACCTCATATTTTTGTATCAAAAAAAAAAAAAAAAAAAAA                                                       ]
[+] EMBL CF330876             [                                                                                                                                                                                                          CGCGAAAAGGATCTTGATCGTCTACGTAATAAAAAACACCACCTCATATTTTTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]




>consensus_6485#1
TAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGAGAGAATGTAAA
GAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGANTCTTTACCTGTACAAGTACT
ACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTCGCGGTTCATCT
CCGATNCGTTGCAATGGATACACGCGAAAAGGATCTTGANCGTCTACGTAATNAAAAACA
CCACCTCATATTTTTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6485#0      AGGCTGTTGTCCTCGACCAACCAGCCCAGCTTCNTGAGCCAGAAGGACATCGATGCCGCA 60
consensus_6485#1      ------------------------------------------------------------
                                                                                  

consensus_6485#0      AGAGAGGCTGATAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGA 120
consensus_6485#1      -----------TAAGCTAGCCAGCAAATCGCCTGTGCCAGTTAACACCAAGGAGCACGGA 49
                                 *************************************************

consensus_6485#0      GAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGATTCTTTACCT 180
consensus_6485#1      GAGAATGTAAAGAAGCCGGCAAATGGTGAGAAATAGCATGCCTTTGATGANTCTTTACCT 109
                      ************************************************** *********

consensus_6485#0      GTACAGTAGCTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTC 240
consensus_6485#1      GTACAAGTACTACGCTATTCGGCTGAGGCCATGAACCGATCCTACTCAATTTTTGTTTTC 169
                      *****    ***************************************************

consensus_6485#0      GCGGTTCATCTCCGATGCGTTGCAATGGATACACGCGAAAAGGATCTTGATCGTCTACGT 300
consensus_6485#1      GCGGTTCATCTCCGATNCGTTGCAATGGATACACGCGAAAAGGATCTTGANCGTCTACGT 229
                      **************** ********************************* *********

consensus_6485#0      AATAAAAAACACCNCCTCATATTTTTGTATCAGAGAACATGTGTGTAGCACTACGCACTT 360
consensus_6485#1      AATNAAAAACACCACCTCATATTTTTGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 289
                      *** ********* ****************** * ** *       *  *  *   *   

consensus_6485#0      TGCAAGAGTTCTGCCTATTATTTCGGTAANAGAACTTCTTGATTTTTGTGTTCTGCNAAA 420
consensus_6485#1      AAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT------------- 336
                         ** *         *  *   * ** *      * * *    * *             

consensus_6485#0      AAAAAAAAAAAAAA 434
consensus_6485#1      --------------