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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAAATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTGCGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAGTAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGAACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAGGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGGTGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT]
[+] EMBL CA759170 [TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAAATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTGCGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAGTAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGAACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAGGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGGTGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGGTCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGCGCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAATCAATTCTCCGAGT]
consensusID : consensus_652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACGACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG]
[-] EMBL AB021942 [GTGCAAGTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGGTGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGCAAGAGTCGTGAAGAACTTCGTTCGTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGGGCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGTTAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATTCACGACGTTTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTATTGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCAGCAGCTGCTGTCTGCCTCGCCTCGCCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_652#0 TTTTTTTTTTTTTTAAGGTAAAATAAGCATAGACATTGTTGATATTCACATAGGATTGAA 60
consensus_652#1 ------------------------------------------------------------
consensus_652#0 ATCCTATGGATAACATTGTGAACATGTAAATAACAAGAAGAAAATCAAATAAAATAGGTG 120
consensus_652#1 ------------------------------------------------------------
consensus_652#0 CGGAAGATGTTGAGGCATTCGTATTGCCTCCGTTGATGTTGTCTCCTCTGTTCTCTCTAG 180
consensus_652#1 ------------------------------------------------------------
consensus_652#0 TAGAAGCCATGGTGAAGCAGAAGCAGAGGAAGATGCAACGTTGTCGTCGAAGAACAAAGA 240
consensus_652#1 ------------------------------------------------------------
consensus_652#0 ACAGGAGCAGTCGCGCTTGAAGCGCTACCCAAAAACTTGATCGCCCTCCTACCCATGCAG 300
consensus_652#1 ------------------------------------------------------GTGCAA 6
****
consensus_652#0 GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCGTCCCGTACACCTGTGCCCGCAGG 360
consensus_652#1 GTTCTCAAGCGGACGGAGTTCCGGAGGCACCTGCTCATCCCGTACATCTGTGCGCGCAGG 66
************************************ ********* ****** ******
consensus_652#0 TGAAAAGAACCGGGGAAGGATTCTATAGCTCAAGTGCAAGAGAGG--------------- 405
consensus_652#1 TGAACAGAACCGGGGAAGGATTCTGCAGCTCAGGAACAGAGGAGGAGGAACTCGAAGTGC 126
**** ******************* ****** * ** ****
consensus_652#0 -----TCGGGAAGAACTTCTCCCCGTCCTTCTGGCCGCTGTGGAGTATATATATGCGAGC 460
consensus_652#1 AAGAGTCGTGAAGAACTTCGTTC-GTCCTTCTGGTCGCTGCGGAGTATATATATGCGAGG 185
*** ********** * ********** ***** ******************
consensus_652#0 GCGAGAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGT 520
consensus_652#1 GCGACAGTAACGTTCGGAGTCATCAACCGCGGTGTTTAATTTCGTAACCGACGCGCTCGT 245
**** *******************************************************
consensus_652#0 TAATACGGAATCAATCCACGACGTTTAATTCCGTAACTGATGCACTCGTTAATACGAAAT 580
consensus_652#1 TAATACGGAATCAATTCACGGCGTTTAATTCCGTAACCGACGGAATCAATT-CACGACGT 304
*************** **** **************** ** * * ** * **** *
consensus_652#0 C-AATTCTCCGAGT---------------------------------------------- 593
consensus_652#1 TTAATTCCGTAACTGACGGAATCAATTCACGATGTTTAATTCCGTAACCGACGTGTTTAT 364
***** * *
consensus_652#0 ------------------------------------------------------------
consensus_652#1 TGATACGAAATCAATTCTCCGTGTTTATTACCGTCCGTTACAAAACGAGAGAGTACAGCA 424
consensus_652#0 -----------------------------
consensus_652#1 GCAGCTGCTGTCTGCCTCGCCTCGCCTCG 453
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||