cluster # 6556

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Oryza sativa
cluster # 6556 cluster # 6556 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6556#0 length = 756 sequences # 1

consensus_6556#1 length = 370 sequences # 3

consensusID : consensus_6556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence

                              [GGCAAAAATGTAATGGACATACTCATTCTCAGGAATCACTTTGGACCCTATGCACCAAAATAAGTTTTGGGTTCATTTGATACGACTCTAACTCCTAAATTCTACTCCCTCCATCCCAAATTGATAATCACACATATAATGTTTGGGCACTAAAAAAAAAAGTTATTTAAACCGCATCGATTAACAATTTAATACGTCATGCACAATATACACACATTATCTCATAATGCATGCATCGATTAAAACACAATTCATAATTATATCCTTAGCATGCACTACATTCTCCTATGCTACATTAATTGGACTCCGATGAAATCCGTGTCCACGCCATTATATGACACTAATCAATTTAAAAAATTATATAATGATCAATTTGGTAAGGAGGGAGTACTTTATGAAGGATATATTAGTCGTGCTAGCTTATTTTGTGAGAGCACTATAATCAGCTCCACTTTACTTCCTTTTTAAGTGAAGCTAAAATTATTTGGTTGAGGTTCAGCTCTATATAAGAGATGAAATTGAAGCTAGAACTACGCCGAATTAACACTTACTCTGATACTATTACCCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATATAGGCGTGGGCGATCGAGTGATGAGACACTCGGACATCAACCAA]

[+] EMBL CB676436             [GGCAAAAATGTAATGGACATACTCATTCTCAGGAATCACTTTGGACCCTATGCACCAAAATAAGTTTTGGGTTCATTTGATACGACTCTAACTCCTAAATTCTACTCCCTCCATCCCAAATTGATAATCACACATATAATGTTTGGGCACTAAAAAAAAAAGTTATTTAAACCGCATCGATTAACAATTTAATACGTCATGCACAATATACACACATTATCTCATAATGCATGCATCGATTAAAACACAATTCATAATTATATCCTTAGCATGCACTACATTCTCCTATGCTACATTAATTGGACTCCGATGAAATCCGTGTCCACGCCATTATATGACACTAATCAATTTAAAAAATTATATAATGATCAATTTGGTAAGGAGGGAGTACTTTATGAAGGATATATTAGTCGTGCTAGCTTATTTTGTGAGAGCACTATAATCAGCTCCACTTTACTTCCTTTTTAAGTGAAGCTAAAATTATTTGGTTGAGGTTCAGCTCTATATAAGAGATGAAATTGAAGCTAGAACTACGCCGAATTAACACTTACTCTGATACTATTACCCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATATAGGCGTGGGCGATCGAGTGATGAGACACTCGGACATCAACCAA]




>consensus_6556#0
GGCAAAAATGTAATGGACATACTCATTCTCAGGAATCACTTTGGACCCTATGCACCAAAA
TAAGTTTTGGGTTCATTTGATACGACTCTAACTCCTAAATTCTACTCCCTCCATCCCAAA
TTGATAATCACACATATAATGTTTGGGCACTAAAAAAAAAAGTTATTTAAACCGCATCGA
TTAACAATTTAATACGTCATGCACAATATACACACATTATCTCATAATGCATGCATCGAT
TAAAACACAATTCATAATTATATCCTTAGCATGCACTACATTCTCCTATGCTACATTAAT
TGGACTCCGATGAAATCCGTGTCCACGCCATTATATGACACTAATCAATTTAAAAAATTA
TATAATGATCAATTTGGTAAGGAGGGAGTACTTTATGAAGGATATATTAGTCGTGCTAGC
TTATTTTGTGAGAGCACTATAATCAGCTCCACTTTACTTCCTTTTTAAGTGAAGCTAAAA
TTATTTGGTTGAGGTTCAGCTCTATATAAGAGATGAAATTGAAGCTAGAACTACGCCGAA
TTAACACTTACTCTGATACTATTACCCCAACGATACACATGATGACATAAAACCAATAAC
AATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCAC
AAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATATAGGCGTG
GGCGATCGAGTGATGAGACACTCGGACATCAACCAA

consensusID : consensus_6556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 370
fasta sequence

                              [CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCGAATTAACACTTACTCTGATACTATTA-CGCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATAGAGGCGTGGGCGATCGAGTNATGAGACACTCGGACATCAACCAACGTTACGTTACGNGCCTCCCTCTCTACGTGGCGCTCTTCTAGTTCTCCCTCGCACGNTGCCTGCCTGA-TGCCGATCGATCGATGCTGCGACGTGATCTCCATGCATCGNCTGCCT]

[+] EMBL OSR18181A            [CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCGAATTAACACTTACTCTGATACTATTA CGCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATAGAGGCGTGGGCGATCGAGTNATGAGACACTCGGACATCAACCAACGTTACGTTACGNGCCTCCCTCTCTACGTGGCGCTCTTCTAGTTCTCCCTCGCACGNTGCCTGCCTGA TGCCGATCGATCGATGCTGCGACGTGATCTCCATGCATCGNCTGCCT]
[+] EMBL OSR17021A            [CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCGAATTAACACTTACTCTGATACTATTA CGCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATAGAGGCGTGGGCGATCGNGTCATGAGACACTCGGACATCAACCAACGTTACGTTACGTGCCTCCNTCTCTACGTGGCGCTCTNCTAGTTCTCCCTCGCACGNTGCCTGCCTNANTGCCGATCGATCGAT                                ]
[-] EMBL AU173237             [           TTTTTTTTTTTTTTTTTTTTACGCCGAATTAACACTTACTCTGATACTATTACCGCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACATNTNTNTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGTGTTACGNGGGCCTGCCTCATCCAACAAAATANAGGCGTGGGCGATCGAGTGATGANACACTCGGACATCAACCAACGT                                                                                                                 ]




>consensus_6556#1
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCGAATTAACACTTACTCTGATACTA
TTACGCCAACGATACACATGATGACATAAAACCAATAACAATGATACTAGGACAGGAACA
TCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCACAAGATCGATCGATGTACGCGT
GTTACGTGGGCCTGCCTCATCCAACAAAATAGAGGCGTGGGCGATCGAGTNATGAGACAC
TCGGACATCAACCAACGTTACGTTACGNGCCTCCCTCTCTACGTGGCGCTCTTCTAGTTC
TCCCTCGCACGNTGCCTGCCTGATGCCGATCGATCGATGCTGCGACGTGATCTCCATGCA
TCGNCTGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6556#0      GGCAAAAATGTAATGGACATACTCATTCTCAGGAATCACTTTGGACCCTATGCACCAAAA 60
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TAAGTTTTGGGTTCATTTGATACGACTCTAACTCCTAAATTCTACTCCCTCCATCCCAAA 120
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TTGATAATCACACATATAATGTTTGGGCACTAAAAAAAAAAGTTATTTAAACCGCATCGA 180
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TTAACAATTTAATACGTCATGCACAATATACACACATTATCTCATAATGCATGCATCGAT 240
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TAAAACACAATTCATAATTATATCCTTAGCATGCACTACATTCTCCTATGCTACATTAAT 300
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TGGACTCCGATGAAATCCGTGTCCACGCCATTATATGACACTAATCAATTTAAAAAATTA 360
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TATAATGATCAATTTGGTAAGGAGGGAGTACTTTATGAAGGATATATTAGTCGTGCTAGC 420
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TTATTTTGTGAGAGCACTATAATCAGCTCCACTTTACTTCCTTTTTAAGTGAAGCTAAAA 480
consensus_6556#1      ------------------------------------------------------------
                                                                                  

consensus_6556#0      TTATTTGGTTGAGGTTCAGCTCTATATAAGAGATGAAATTGAAGCTAGAACTACGCCGAA 540
consensus_6556#1      ---------------------CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCGAA 39
                                           ** * *      *    **     *     *********

consensus_6556#0      TTAACACTTACTCTGATACTATTACCCCAACGATACACATGATGACATAAAACCAATAAC 600
consensus_6556#1      TTAACACTTACTCTGATACTATTACGCCAACGATACACATGATGACATAAAACCAATAAC 99
                      ************************* **********************************

consensus_6556#0      AATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCAC 660
consensus_6556#1      AATGATACTAGGACAGGAACATCTCTCTTGTATGAACAACGTATAAAATACTCAGAGCAC 159
                      ************************************************************

consensus_6556#0      AAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATATAGGCGTG 720
consensus_6556#1      AAGATCGATCGATGTACGCGTGTTACGTGGGCCTGCCTCATCCAACAAAATAGAGGCGTG 219
                      **************************************************** *******

consensus_6556#0      GGCGATCGAGTGATGAGACACTCGGACATCAACCAA------------------------ 756
consensus_6556#1      GGCGATCGAGTNATGAGACACTCGGACATCAACCAACGTTACGTTACGNGCCTCCCTCTC 279
                      *********** ************************                        

consensus_6556#0      ------------------------------------------------------------
consensus_6556#1      TACGTGGCGCTCTTCTAGTTCTCCCTCGCACGNTGCCTGCCTGATGCCGATCGATCGATG 339
                                                                                  

consensus_6556#0      -------------------------------
consensus_6556#1      CTGCGACGTGATCTCCATGCATCGNCTGCCT 370