cluster # 6589

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Oryza sativa
cluster # 6589 cluster # 6589 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6589#0 length = 545 sequences # 3

consensus_6589#1 length = 477 sequences # 1

consensusID : consensus_6589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 545
fasta sequence

                              [CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTGGCTGC-ATGCTC-TTCTT-CTGCA-TTTCTT-CTT-GGATTTGTGTTGTCTGATTT-ATTAGGTGTTTTCA--TGAG-CTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTCAGAATGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAGCTATTGAAA]

[+] EMBL AK103330             [CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTGGCTGC ATGCTC TTCTT CTGCA TTTCTT CTT GGATTTGTGTTGTCTGATTT ATTAGGTGTTTTCA  TGAG CTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTCAGAATGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAGCTATTGAAA]
[+] EMBL AU161830             [                      GGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGNCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTNGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTNGCTGCAATGCTCNTTCTTCCTGCANTTTCTTCCTTGGGATTTGTGTTGNCTGATTTAATAAGGTGTTTTCAANTGAGCCTCAAat                                                                                                                                                          ]
[+] EMBL AU176551             [                       GTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACNAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTGGCTGC ATGCTC TTCTT CTGCA TTTCTT CTT GGATTTGTGTTGTCTGATTT ATTAGGTGTTTTCA  TGAG CTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTaaaaa                                                                                                                  ]




>consensus_6589#0
CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAAT
GAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGG
TGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCG
GGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTT
ATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAA
TTTCTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGTTGTC
TGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTG
TGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTCAGAA
TGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAGCTAT
TGAAA

consensusID : consensus_6589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGACCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGTTGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAAAAAA]

[+] EMBL AU091361             [CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGACCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGTTGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAAAAAA]




>consensus_6589#1
CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCG
GCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCG
TGGTATCGAGGTGGTCGTGGAGTCGTCGGACCGGCGATGTGGCGGCGGCGGCGGGGGCTT
TGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGC
ATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTT
TTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGTTGTCTGA
TTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGA
ATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6589#0      CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAAT 60
consensus_6589#1      ------CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAAT 54
                            ******************************************************

consensus_6589#0      GAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGG 120
consensus_6589#1      GAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGG 114
                      ************************************************************

consensus_6589#0      TGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCG 180
consensus_6589#1      TGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGA-CCGGCGATGTGGCGGCGGCGGCG 173
                      ************************************ ***********************

consensus_6589#0      GGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTT 240
consensus_6589#1      GGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTT 233
                      ************************************************************

consensus_6589#0      ATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAA 300
consensus_6589#1      ATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAA 293
                      ************************************************************

consensus_6589#0      TTTCTTTTTTTTTTT----GGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGT 356
consensus_6589#1      TTTCTTTTTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGT 353
                      ***************    *****************************************

consensus_6589#0      TGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGA 416
consensus_6589#1      TGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGA 413
                      ************************************************************

consensus_6589#0      ATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTC 476
consensus_6589#1      ATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAA 473
                      ***********************************************             

consensus_6589#0      AGAATGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAG 536
consensus_6589#1      AAAA-------------------------------------------------------- 477
                      * **                                                        

consensus_6589#0      CTATTGAAA 545
consensus_6589#1      ---------