Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6605 cluster # 6605       Sequences # 4       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6605#0 length = 2433 sequences # 2  
 consensus_6605#1 length = 713 sequences # 1  
consensus_6605#2 length = 307 sequences # 1  
consensusID : consensus_6605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2433
fasta sequence 
                              [CTTATCTCCTCCACTCATTTCCTTCTCCTCCTCTCTCTCTCTCTACCAGCAGAGCTGCTCCGCGCTCTAGCCTCCACCTTTCTCCACCACCGCCTCCCCTCTTCGCCGCGAGTGCCGCCGCCCCACCTCGCCGCCACGGCCACAGCCTCCCCTTCTCGCCGCGTCGCGGGCCCTCCCTCCTCGCCGCCTCCTCCTTCTCCACCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGCGCGATGACGACGACGATGATGGCGACGCCTATGGATCTGCCATTGGCTTGGCCCGGGCGCGTGGATCCGCCGCTGGCTGGTCTCGGGGAGGGGAGGGGAGCTGGTGGCGACGAGGAGGAGAGGCGGCGGCTCACCTCCTCGCTCTCCCTTCGTCGCACCGATGACGATGGCGACGACGGCGCCGCGTGTGGTAAGCCCGGACAGAGGAAGAGAGGCAGCGACGCACGACGACGGCCTCAACGATGTCGCCGCCAGCTGTTGGGGAGGCCAGCGGACGGAGGAGGAGAGCCATCGGCCAGAGGGGAGGCCGGCGGCGGTGCCTTTTTTTTTTATTTGCTGTGATGTTTTTCGCAGGCGGGTGAATCTACCGTCAGGCAGGCCATTGGGCCGCCTGCAAAAATCATTTATTTTCGCAGGCCTTTGCTTCTAGACGGTTCGTTCCCCCATGCATCTTTCCCACTGAGTTACTTGTCTCTTTTGTTTACATGAGTTTTACGCGCAAATTGCAGTCTAATTTTTTTTTAAGAATTATACAGTACAATGTAGACATTCACAACACATGCACACTCACCCCTATAAACATACTAGTTATATTGTAATTACTTACTAGTTACATTGTAGTTACATTCGTACTATTAAAGTAAATAAAATCTTTGTGTGTGTCTATATATATAGTCCCCACCAACCGAGCAAGCTAACCATGTTGGGTACGTAATAAAATATTATAGTTACAATGTAGTTATAGTATAATTACAATATAGTTATACTATTATATTTGTAACTACAACATAAGTAAACAAATTCTAATTATAAGCCTGTTATGAATTTTTTGGCAGCCCAGTATTGTGGGTTGGTCCATCAGATTGAGGCCCATTAGATAGTTACCGTGGCAGTTACTAGTGAGCAGATCTTATCCAAGGGTTAAAAAAAAACGTGATATATGGACTCCAAAAATCTGTCGATAGACAGCTATGTAGTCCTTTCCAACCAGCTCTTATGTAGTTTTCATCAAATCATATCTCTCAATCCCCCTCCCACTCCTCCACTATATCTCATTCATTAGGGCCATCATGTTTTTTTTATCCGTAATCTCTTAAAAATTTTAAAAATATCTTATATTTATGGACAGAGTGAGTACACAACACGAAATATCATGACAATGAATAGGTGTGAGCGTGACTACATTGGTGCATATATATACCGATAGTGTAGTCGATTGCAGTGCCAAATACCAACATCTGATACACGTCTAGCATATCAAAGCCTTATACCAGTATATATACCACCAGTCCACCACATCGTACTGCAGGTGAGTTCCAGCGTTCTGTCTAGCTAGGTTGAACAAATTAAAATATTGAGACAATACTTCTAATGTTACAGTACCAATATTTTTTTCTTCCAATTCAATAGAAAACAGGTAGCTCTGCTGTCCCAGAAAACTTGAATATGCCACCCAGTTTGCCACCATTTGGTCAGGCTTGTCTGAATTACTGAATAGAAAATGGTAGCTATGCTTTACATCATGTGCGTGTGTGTTATATATGCAAGGTTATATTATTCTCATTGGTTTGGTAGGCATCAGGAACATCTGCTCGCCATGCAGGAAGCAGAAATGTAATTTAGCAGAGGATTATTGCGAGTTGTAGTGATGCAAAGGACAGAGCTGGAATGGCCTTAGTAGCACTCTTCAAAATGTGCCACCTAGAAAGAAATAGGGCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCGAGATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGCGTGATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGACCATGAATTAACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCTTATTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGTGACGCAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAAA]

[+] EMBL AK061480             [CTTATCTCCTCCACTCATTTCCTTCTCCTCCTCTCTCTCTCTCTACCAGCAGAGCTGCTCCGCGCTCTAGCCTCCACCTTTCTCCACCACCGCCTCCCCTCTTCGCCGCGAGTGCCGCCGCCCCACCTCGCCGCCACGGCCACAGCCTCCCCTTCTCGCCGCGTCGCGGGCCCTCCCTCCTCGCCGCCTCCTCCTTCTCCACCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGCGCGATGACGACGACGATGATGGCGACGCCTATGGATCTGCCATTGGCTTGGCCCGGGCGCGTGGATCCGCCGCTGGCTGGTCTCGGGGAGGGGAGGGGAGCTGGTGGCGACGAGGAGGAGAGGCGGCGGCTCACCTCCTCGCTCTCCCTTCGTCGCACCGATGACGATGGCGACGACGGCGCCGCGTGTGGTAAGCCCGGACAGAGGAAGAGAGGCAGCGACGCACGACGACGGCCTCAACGATGTCGCCGCCAGCTGTTGGGGAGGCCAGCGGACGGAGGAGGAGAGCCATCGGCCAGAGGGGAGGCCGGCGGCGGTGCCTTTTTTTTTTATTTGCTGTGATGTTTTTCGCAGGCGGGTGAATCTACCGTCAGGCAGGCCATTGGGCCGCCTGCAAAAATCATTTATTTTCGCAGGCCTTTGCTTCTAGACGGTTCGTTCCCCCATGCATCTTTCCCACTGAGTTACTTGTCTCTTTTGTTTACATGAGTTTTACGCGCAAATTGCAGTCTAATTTTTTTTTAAGAATTATACAGTACAATGTAGACATTCACAACACATGCACACTCACCCCTATAAACATACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK069369             [                                   TCTCTCTCTACCAGCAGAGCTGCTCCGCGCTCTAGCCTCCACCTTTCTCCACCACCGCCTCCCCTCTTCGCCGCGAGTGCCGCCGCCCCACCTCGCCGCCACGGCCACAGCCTCCCCTTCTCGCCGCGTCGCGGGCCCTCCCTCCTCGCCGCCTCCTCCTTCTCCACCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGCGCGATGACGACGACGATGATGGCGACGCCTATGGATCTGCCATTGGCTTGGCCCGGGCGCGTGGATCCGCCGCTGGCTGGTCTCGGGGAGGGGAGGGGAGCTGATGGCGACGAGGAGGAGAGGCGGCGGCTCACCTCCTCGCTCTCCCTTCGTCGCACCGATGACGATGGCGACGACGGCGCCGCGTGTGGTAAGCCCGGACAGAGGAAGAGAGGCAGCGACGCACGACGACGGCCTCAACGATGTCGCCGCCAGCTGTTGGGGAGGCCAGCGGACGGAGGAGGAGAGCCATCGGCCAGAGGGGAGGCCGGCGGCGGTGCCTTTTTTTTTTATTTGCTGTGATGTTTTTCGCAGGCGGGTGAATCTACCGTCAGGCAGGCCATTGGGCCGCCTGCAAAAATCATTTATTTTCGCAGGCCTTTGCTTCTAGACGGTTCGTTCCCCCATGCATCTTTCCCACTGAGTTACTTGTCTCTTTTGTTTACATGAGTTTTACGCGCAAATTGCAGTCTAATTTTTTTTTAAGAATTATACAGTACAATGTAGACATTCACAACACATGCACACTCACCCCTATAAACATACTAGTTATATTGTAATTACTTACTAGTTACATTGTAGTTACATTCGTACTATTAAAGTAAATAAAATCTTTGTGTGTGTCTATATATATAGTCCCCACCAACCGAGCAAGCTAACCATGTTGGGTACGTAATAAAATATTATAGTTACAATGTAGTTATAGTATAATTACAATATAGTTATACTATTATATTTGTAACTACAACATAAGTAAACAAATTCTAATTATAAGCCTGTTATGAATTTTTTGGCAGCCCAGTATTGTGGGTTGGTCCATCAGATTGAGGCCCATTAGATAGTTACCGTGGCAGTTACTAGTGAGCAGATCTTATCCAAGGGTTAAAAAAAAACGTGATATATGGACTCCAAAAATCTGTCGATAGACAGCTATGTAGTCCTTTCCAACCAGCTCTTATGTAGTTTTCATCAAATCATATCTCTCAATCCCCCTCCCACTCCTCCACTATATCTCATTCATTAGGGCCATCATGTTTTTTTTATCCGTAATCTCTTAAAAATTTTAAAAATATCTTATATTTATGGACAGAGTGAGTACACAACACGAAATATCATGACAATGAATAGGTGTGAGCGTGACTACATTGGTGCATATATATACCGATAGTGTAGTCGATTGCAGTGCCAAATACCAACATCTGATACACGTCTAGCATATCAAAGCCTTATACCAGTATATATACCACCAGTCCACCACATCGTACTGCAGGTGAGTTCCAGCGTTCTGTCTAGCTAGGTTGAACAAATTAAAATATTGAGACAATACTTCTAATGTTACAGTACCAATATTTTTTTCTTCCAATTCAATAGAAAACAGGTAGCTCTGCTGTCCCAGAAAACTTGAATATGCCACCCAGTTTGCCACCATTTGGTCAGGCTTGTCTGAATTACTGAATAGAAAATGGTAGCTATGCTTTACATCATGTGCGTGTGTGTTATATATGCAAGGTTATATTATTCTCATTGGTTTGGTAGGCATCAGGAACATCTGCTCGCCATGCAGGAAGCAGAAATGTAATTTAGCAGAGGATTATTGCGAGTTGTAGTGATGCAAAGGACAGAGCTGGAATGGCCTTAGTAGCACTCTTCAAAATGTGCCACCTAGAAAGAAATAGGGCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCGAGATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGCGTGATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGACCATGAATTAACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCTTATTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGTGACGCAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAAA]




>consensus_6605#0
CTTATCTCCTCCACTCATTTCCTTCTCCTCCTCTCTCTCTCTCTACCAGCAGAGCTGCTC
CGCGCTCTAGCCTCCACCTTTCTCCACCACCGCCTCCCCTCTTCGCCGCGAGTGCCGCCG
CCCCACCTCGCCGCCACGGCCACAGCCTCCCCTTCTCGCCGCGTCGCGGGCCCTCCCTCC
TCGCCGCCTCCTCCTTCTCCACCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCG
GGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGC
GCGATGACGACGACGATGATGGCGACGCCTATGGATCTGCCATTGGCTTGGCCCGGGCGC
GTGGATCCGCCGCTGGCTGGTCTCGGGGAGGGGAGGGGAGCTGGTGGCGACGAGGAGGAG
AGGCGGCGGCTCACCTCCTCGCTCTCCCTTCGTCGCACCGATGACGATGGCGACGACGGC
GCCGCGTGTGGTAAGCCCGGACAGAGGAAGAGAGGCAGCGACGCACGACGACGGCCTCAA
CGATGTCGCCGCCAGCTGTTGGGGAGGCCAGCGGACGGAGGAGGAGAGCCATCGGCCAGA
GGGGAGGCCGGCGGCGGTGCCTTTTTTTTTTATTTGCTGTGATGTTTTTCGCAGGCGGGT
GAATCTACCGTCAGGCAGGCCATTGGGCCGCCTGCAAAAATCATTTATTTTCGCAGGCCT
TTGCTTCTAGACGGTTCGTTCCCCCATGCATCTTTCCCACTGAGTTACTTGTCTCTTTTG
TTTACATGAGTTTTACGCGCAAATTGCAGTCTAATTTTTTTTTAAGAATTATACAGTACA
ATGTAGACATTCACAACACATGCACACTCACCCCTATAAACATACTAGTTATATTGTAAT
TACTTACTAGTTACATTGTAGTTACATTCGTACTATTAAAGTAAATAAAATCTTTGTGTG
TGTCTATATATATAGTCCCCACCAACCGAGCAAGCTAACCATGTTGGGTACGTAATAAAA
TATTATAGTTACAATGTAGTTATAGTATAATTACAATATAGTTATACTATTATATTTGTA
ACTACAACATAAGTAAACAAATTCTAATTATAAGCCTGTTATGAATTTTTTGGCAGCCCA
GTATTGTGGGTTGGTCCATCAGATTGAGGCCCATTAGATAGTTACCGTGGCAGTTACTAG
TGAGCAGATCTTATCCAAGGGTTAAAAAAAAACGTGATATATGGACTCCAAAAATCTGTC
GATAGACAGCTATGTAGTCCTTTCCAACCAGCTCTTATGTAGTTTTCATCAAATCATATC
TCTCAATCCCCCTCCCACTCCTCCACTATATCTCATTCATTAGGGCCATCATGTTTTTTT
TATCCGTAATCTCTTAAAAATTTTAAAAATATCTTATATTTATGGACAGAGTGAGTACAC
AACACGAAATATCATGACAATGAATAGGTGTGAGCGTGACTACATTGGTGCATATATATA
CCGATAGTGTAGTCGATTGCAGTGCCAAATACCAACATCTGATACACGTCTAGCATATCA
AAGCCTTATACCAGTATATATACCACCAGTCCACCACATCGTACTGCAGGTGAGTTCCAG
CGTTCTGTCTAGCTAGGTTGAACAAATTAAAATATTGAGACAATACTTCTAATGTTACAG
TACCAATATTTTTTTCTTCCAATTCAATAGAAAACAGGTAGCTCTGCTGTCCCAGAAAAC
TTGAATATGCCACCCAGTTTGCCACCATTTGGTCAGGCTTGTCTGAATTACTGAATAGAA
AATGGTAGCTATGCTTTACATCATGTGCGTGTGTGTTATATATGCAAGGTTATATTATTC
TCATTGGTTTGGTAGGCATCAGGAACATCTGCTCGCCATGCAGGAAGCAGAAATGTAATT
TAGCAGAGGATTATTGCGAGTTGTAGTGATGCAAAGGACAGAGCTGGAATGGCCTTAGTA
GCACTCTTCAAAATGTGCCACCTAGAAAGAAATAGGGCATATCGACTGCTCCATCTGGAT
CAGTATCATCGCTATGAGGCAGGAGTGGAAGCCGAGATCCCTATGTAAGAATATGAAGAA
AGATGACGATCTGCTAAAACCTAGAGACGCGAGCGTGATCAAACTAGTTGTTCTAGCCAG
CTGAGGCTATCAGCTTCTAATCATGACCATGAATTAACATCAAGGCATGTATTAAACTTA
ATTGGAATCGATATCGTAATTCTTACTTTTGCCTTATTTCCAGTTCCATTTTTTTTATTT
TGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATATT
CACTTAAGCTTTTTTTATTTTCTGAAATTTGTGACGCAAAGGACCTGTAATTGACGGTTA
TATATGACCACTCTTATACATTTTCATTTGAAA

consensusID : consensus_6605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence 
                              [TAAAAAAAGGATCTTTTCCAAAATATAACACCCAGTGCCCCTGTGAGGTTTTTAAAAGAAAAAAAGGGGTTCGTTACTCAAGGGTGGGTTAAACGAAGTAATTATTTCATGGTTGGAGCACAAGAAATTGCTCCCAGCAGGAACAAAAATTATTTAGCAGGGATTATGCGAGTGGTATTATCAAAGGAAAAAGTGGAATGGCTTAGAGCACTCTTCAAAATGTCCACTTAGAAAGAAATAGGGCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCGAGATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGCGTGATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGCCCATGAATTAACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCTTATTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGTGACGCAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAAAAATGGCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC]

[-] EMBL AW155376             [TAAAAAAAGGATCTTTTCCAAAATATAACACCCAGTGCCCCTGTGAGGTTTTTAAAAGAAAAAAAGGGGTTCGTTACTCAAGGGTGGGTTAAACGAAGTAATTATTTCATGGTTGGAGCACAAGAAATTGCTCCCAGCAGGAACAAAAATTATTTAGCAGGGATTATGCGAGTGGTATTATCAAAGGAAAAAGTGGAATGGCTTAGAGCACTCTTCAAAATGTCCACTTAGAAAGAAATAGGGCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCGAGATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGCGTGATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGCCCATGAATTAACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCTTATTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGTGACGCAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAAAAATGGCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC]




>consensus_6605#1
TAAAAAAAGGATCTTTTCCAAAATATAACACCCAGTGCCCCTGTGAGGTTTTTAAAAGAA
AAAAAGGGGTTCGTTACTCAAGGGTGGGTTAAACGAAGTAATTATTTCATGGTTGGAGCA
CAAGAAATTGCTCCCAGCAGGAACAAAAATTATTTAGCAGGGATTATGCGAGTGGTATTA
TCAAAGGAAAAAGTGGAATGGCTTAGAGCACTCTTCAAAATGTCCACTTAGAAAGAAATA
GGGCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCG
AGATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGC
GTGATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGCCCATGAAT
TAACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCT
TATTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTT
ATATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGTGA
CGCAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAAAA
ATGGCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC

consensusID : consensus_6605#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence 
                              [CACCTCGCCGCCNCGGCCACAGCCTCCCCNTTCTCGCCGCGTCNCGGGGCCCTCCCTCCTCGCCGCCTCCTCCTTCTCCANCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGCGCGATGACGACCAACAATGATGGCGACNCCTATGGGATCTGCCATTGGCTTGGCCCGGGCGCGTGGATCCGCCGCTGGCTGGTCTCGGGGAANGGGGANGGGGAACTGGGTGGCGACCAANGAAGAAA]

[+] EMBL BE228756             [CACCTCGCCGCCNCGGCCACAGCCTCCCCNTTCTCGCCGCGTCNCGGGGCCCTCCCTCCTCGCCGCCTCCTCCTTCTCCANCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGCGCGATGACGACCAACAATGATGGCGACNCCTATGGGATCTGCCATTGGCTTGGCCCGGGCGCGTGGATCCGCCGCTGGCTGGTCTCGGGGAANGGGGANGGGGAACTGGGTGGCGACCAANGAAGAAA]




>consensus_6605#2
CACCTCGCCGCCNCGGCCACAGCCTCCCCNTTCTCGCCGCGTCNCGGGGCCCTCCCTCCT
CGCCGCCTCCTCCTTCTCCANCACCGCCTCCGCTGTCTCTGCCACCGCCTCTGCAGCCGG
GCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGGCCGTGATGCG
CGATGACGACCAACAATGATGGCGACNCCTATGGGATCTGCCATTGGCTTGGCCCGGGCG
CGTGGATCCGCCGCTGGCTGGTCTCGGGGAANGGGGANGGGGAACTGGGTGGCGACCAAN
GAAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6605#0      ------------------------------------------------------------
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      TAAAAAAAGGATCTTTTCCAAAATATAACACCCAGTGCCCCTGTGAGGTTTTTAAAAGAA 60
                                                                                  

consensus_6605#0      ------------------------------------------------------------
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      AAAAAGGGGTTCGTTACTCAAGGGTGGGTTAAACGAAGTAATTATTTCATGGTTGGAGCA 120
                                                                                  

consensus_6605#0      ------------------------------------------------------------
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      CAAGAAATTGCTCCCAGCAGGAACAAAAATTATTTAGCAGGGATTATGCGAGTGGTATTA 180
                                                                                  

consensus_6605#0      ------------------------------------------------------------
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      TCAAAGGAAAAAGTGGAATGGCTTAGAGCACTCTTCAAAATGTCCACTTAGAAAGAAATA 240
                                                                                  

consensus_6605#0      ---CTTATCTCCTCCACTCATTTCCTTCTCCTCCTCTCTCTCTCTCTACCAGCAGAGCTG 57
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      GGGCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCG 300
                                                                                  

consensus_6605#0      CTCCGCGCTCTAGCCTCCACCTTTCTCCACCACCGCCTCCCCTCTTCGCCGCGAGTGCCG 117
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      AGATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGC 360
                                                                                  

consensus_6605#0      CCGCCCCACCTCGCCGCCACGGCCAC----AGCCTCCCCTT-CTCGCCGCGTCGCGGG-C 171
consensus_6605#2      ------CACCTCGCCGCCNCGGCCAC----AGCCTCCCCNTTCTCGCCGCGTCNCGGGGC 50
consensus_6605#1      GTGATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGCCCATGAAT 420
                             * ** *  *     ****      **   *   * **   *  * *   *   

consensus_6605#0      CCTCCCTCCTCGCCGCCTCCTCCTTCTCCACCACCGCCTCCGCTGTCTCTGCCACCGCCT 231
consensus_6605#2      CCTCCCTCCTCGCCGCCTCCTCCTTCTCCANCACCGCCTCCGCTGTCTCTGCCACCGCCT 110
consensus_6605#1      TAACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCT 480
                         *          *  *    ***       * **    **   *   * *    ****

consensus_6605#0      CTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGG 291
consensus_6605#2      CTGCAGCCGGGCTCCCCTCCTCGACGCTTCCACCGCGCCACCTCGCTCCTCCGCCACCGG 170
consensus_6605#1      -TATTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGT-GTTAAACTTTTAAAGCTTTTT 538
                       *    ** *   *   *  *  *   * *      *        **  *    *     

consensus_6605#0      CCGTGAT-GCGCGATGACGAC-GACGATGA-TGGCGACGCCTATGG-ATCTGCCATTGGC 347
consensus_6605#2      CCGTGAT-GCGCGATGACGACCAACAATGA-TGGCGACNCCTATGGGATCTGCCATTGGC 228
consensus_6605#1      TTATATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGT 598
                         *  *  *   *         *   * * *   *     * *    ****  *** * 

consensus_6605#0      TTGGCCCGGGCGCGTGGATCCGCCGCT------GGCTGGTCTCGGGGAGGGG---AGGGG 398
consensus_6605#2      TTGGCCCGGGCGCGTGGATCCGCCGCT------GGCTGGTCTCGGGGAANGGGGANGGGG 282
consensus_6605#1      GACGCAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAA 658
                         **   **  *    **   * * *      * *   ***     *         *  

consensus_6605#0      AGCTGG-TGGCGAC-GAGGAGGAGAGGCGGCGGCTCACCTCCTCGCTCTCCCTTCGTCGC 456
consensus_6605#2      AACTGGGTGGCGACCAANGAAGAAA----------------------------------- 307
consensus_6605#1      AAATGGCTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC----- 713
                      *  *** *  *  *  *  *  * *                                   

consensus_6605#0      ACCGATGACGATGGCGACGACGGCGCCGCGTGTGGTAAGCCCGGACAGAGGAAGAGAGGC 516
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      AGCGACGCACGACGACGGCCTCAACGATGTCGCCGCCAGCTGTTGGGGAGGCCAGCGGAC 576
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GGAGGAGGAGAGCCATCGGCCAGAGGGGAGGCCGGCGGCGGTGCCTTTTTTTTTTATTTG 636
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      CTGTGATGTTTTTCGCAGGCGGGTGAATCTACCGTCAGGCAGGCCATTGGGCCGCCTGCA 696
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      AAAATCATTTATTTTCGCAGGCCTTTGCTTCTAGACGGTTCGTTCCCCCATGCATCTTTC 756
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      CCACTGAGTTACTTGTCTCTTTTGTTTACATGAGTTTTACGCGCAAATTGCAGTCTAATT 816
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TTTTTTTAAGAATTATACAGTACAATGTAGACATTCACAACACATGCACACTCACCCCTA 876
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TAAACATACTAGTTATATTGTAATTACTTACTAGTTACATTGTAGTTACATTCGTACTAT 936
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TAAAGTAAATAAAATCTTTGTGTGTGTCTATATATATAGTCCCCACCAACCGAGCAAGCT 996
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      AACCATGTTGGGTACGTAATAAAATATTATAGTTACAATGTAGTTATAGTATAATTACAA 1056
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TATAGTTATACTATTATATTTGTAACTACAACATAAGTAAACAAATTCTAATTATAAGCC 1116
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TGTTATGAATTTTTTGGCAGCCCAGTATTGTGGGTTGGTCCATCAGATTGAGGCCCATTA 1176
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GATAGTTACCGTGGCAGTTACTAGTGAGCAGATCTTATCCAAGGGTTAAAAAAAAACGTG 1236
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      ATATATGGACTCCAAAAATCTGTCGATAGACAGCTATGTAGTCCTTTCCAACCAGCTCTT 1296
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      ATGTAGTTTTCATCAAATCATATCTCTCAATCCCCCTCCCACTCCTCCACTATATCTCAT 1356
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TCATTAGGGCCATCATGTTTTTTTTATCCGTAATCTCTTAAAAATTTTAAAAATATCTTA 1416
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TATTTATGGACAGAGTGAGTACACAACACGAAATATCATGACAATGAATAGGTGTGAGCG 1476
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TGACTACATTGGTGCATATATATACCGATAGTGTAGTCGATTGCAGTGCCAAATACCAAC 1536
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      ATCTGATACACGTCTAGCATATCAAAGCCTTATACCAGTATATATACCACCAGTCCACCA 1596
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      CATCGTACTGCAGGTGAGTTCCAGCGTTCTGTCTAGCTAGGTTGAACAAATTAAAATATT 1656
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GAGACAATACTTCTAATGTTACAGTACCAATATTTTTTTCTTCCAATTCAATAGAAAACA 1716
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GGTAGCTCTGCTGTCCCAGAAAACTTGAATATGCCACCCAGTTTGCCACCATTTGGTCAG 1776
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GCTTGTCTGAATTACTGAATAGAAAATGGTAGCTATGCTTTACATCATGTGCGTGTGTGT 1836
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TATATATGCAAGGTTATATTATTCTCATTGGTTTGGTAGGCATCAGGAACATCTGCTCGC 1896
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      CATGCAGGAAGCAGAAATGTAATTTAGCAGAGGATTATTGCGAGTTGTAGTGATGCAAAG 1956
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GACAGAGCTGGAATGGCCTTAGTAGCACTCTTCAAAATGTGCCACCTAGAAAGAAATAGG 2016
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GCATATCGACTGCTCCATCTGGATCAGTATCATCGCTATGAGGCAGGAGTGGAAGCCGAG 2076
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      ATCCCTATGTAAGAATATGAAGAAAGATGACGATCTGCTAAAACCTAGAGACGCGAGCGT 2136
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      GATCAAACTAGTTGTTCTAGCCAGCTGAGGCTATCAGCTTCTAATCATGACCATGAATTA 2196
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      ACATCAAGGCATGTATTAAACTTAATTGGAATCGATATCGTAATTCTTACTTTTGCCTTA 2256
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      TTTCCAGTTCCATTTTTTTTATTTTGCAGGTATGTGTTAAACTTTTAAAGCTTTTTTTAT 2316
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      ATTCACTTAAGCTTTTTTTATATTCACTTAAGCTTTTTTTATTTTCTGAAATTTGTGACG 2376
consensus_6605#2      ------------------------------------------------------------
consensus_6605#1      ------------------------------------------------------------
                                                                                  

consensus_6605#0      CAAAGGACCTGTAATTGACGGTTATATATGACCACTCTTATACATTTTCATTTGAAA 2433
consensus_6605#2      ---------------------------------------------------------
consensus_6605#1      ---------------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)