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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[TTTTTTTTTTTTTAAAGAAATG-GCCTTG-CTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAGTCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGGGACCTGAAGCAGTAGTACTCTTCT]
[+] EMBL CA763303 [TTTTTTTTTTTTTAAAGAAATG GCCTTG CTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAGTCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGG ]
[+] EMBL CB632762 [ gTAAAGAAATGAGCCTTGACTGGCCTTTAAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAATGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAACAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGGGACCTGAAGCAGTAGTACTCTTCT]
consensusID : consensus_6649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACCTCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT]
[-] EMBL CA764017 [NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACCTCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT]
consensusID : consensus_6649#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC]
[-] EMBL BM421346 [TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6649#1 NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACC 60
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 ------------------------------------------------------------
consensus_6649#1 TCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC 120
consensus_6649#2 -------------------------------------TTTTTTTTTAAATGGGACCGCCC 23
consensus_6649#0 --------TTTTTTTTTTTTTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC 52
* * ***** *********
consensus_6649#1 ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA 180
consensus_6649#2 ACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTA 83
consensus_6649#0 ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA 112
*** *************** ************************ ** ************
consensus_6649#1 AGACTGCTATATCCC-AAAATTTCACATATAACACAAA--AATTTACAACACCG-AATTG 236
consensus_6649#2 AGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGG 143
consensus_6649#0 AAACTGCTATATCCC-AAAATTTCACATATAACACAAA--AATTTACAACACCG-AATTG 168
* ************* ******************* ** ************** *** *
consensus_6649#1 GGTCCGCCT---AAAAAGTT--ATAT-ATGCAATGCAC-TGGTATGTGCCTTCACGTTCT 289
consensus_6649#2 GGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCT 203
consensus_6649#0 GGTCCGCCT---AAAAAGTT--ATAT-ATGCAATGCAC-TGGTATGTGCCTTCACGTTCT 221
********* * ****** ** *********** *********************
consensus_6649#1 G-AAATATCCAT----ACAAACAAATCGGCTCTCTTG-ACTGCCAACTAGTCAAGG-TGA 342
consensus_6649#2 GCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGA 263
consensus_6649#0 G-AAATATCCAT----ACAAACAAATCGGCTCTCTTG-ACTGCCAACTAGTCAAGG-TGA 274
* ********** **** * ************* ****************** ***
consensus_6649#1 GC---ATGAACCTG-ACAAC--ACCTCTGCAGTCGAAGAGTAG-----CACGGC-ATTGC 390
consensus_6649#2 GCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGC 323
consensus_6649#0 GC---ATGAACCTG-ACAAC--ACCTCTNCAGTCGAAGAGTAG-----CACGGC-ATTGC 322
** * **** ***** ***** * * ** ** ****** *****
consensus_6649#1 TT---GTATC-ATGCTCAAGCGCAAAT--ATTAATTCAAAAATA----ATTTTCTGAGAC 440
consensus_6649#2 CTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGC 383
consensus_6649#0 TT---GTATC-AGGCTCAAGCGCAAAT--ATTAATTCAAAAATA----ATTTTCTGAGAC 372
* ***** * ************** * ***** ** * * ******** *
consensus_6649#1 A---TCATC-ATGCAAG-TGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTA 495
consensus_6649#2 ACATCCATCCATGCAAGGTGTATCTAGTGTCGATC------------------------- 418
consensus_6649#0 A---TCATC-ATGCAAG-TGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTA 427
* **** ******* *****************
consensus_6649#1 ACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGG 555
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 ACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGG 487
consensus_6649#1 TACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT------------------------- 590
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 TACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTC 547
consensus_6649#1 ------------------------------------------------------------
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 AATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAAC 607
consensus_6649#1 ------------------------------------------------------------
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 AACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGA 667
consensus_6649#1 ------------------------------------------------------------
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 TCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATAC 727
consensus_6649#1 ------------------------------------------------------------
consensus_6649#2 ------------------------------------------------------------
consensus_6649#0 ATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGG 787
consensus_6649#1 ------------------------
consensus_6649#2 ------------------------
consensus_6649#0 GACCTGAAGCAGTAGTACTCTTCT 811
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||