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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[AAGCATCTCAGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGGCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAACAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAATGCATCCCACTGGAAATACATAATTACACTAAAATTAGAGTGTAAATATATCGTTAGCAGGTGAGCTTACCTGGAAAAATGAACACTAACGTGTCACTTTGTATTACATCATGCAAACAATTTACATTGTTCTAAGAAACGAGAACTAACCGAGTTTCGAGTGACAAAAACTGCAGGGATGAATGCTATCTCAGGGCCATCAAACTGCACACACACTTCGTCAAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGAAAAATATAAAGATCTAAATGTTAGTTCTAGTTCAACTTTAGACATGATCAACCAAGGATGACAAAATGCACATAATTAAACTTATCCTTCCGTGCTCATGTATCTGGAGGCCATGAACACATCTATTAATCCAGAAATCCTTTATCTGATATATGATGCCTCGTTTTGAGCACATGATTCAACTTAAAAAATAAAATAAAATTGAACCTGTTAATCATTTGATGAAGCAACCCATGAGCATGAGAGAGTGAT]
[+] EMBL CB619409 [AAGCATCTCAGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGGCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAACAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAATGCATCCCACTGGAAATACATAATTACACTAAAATTAGAGTGTAAATATATCGTTAGCAGGTGAGCTTACCTGGAAAAATGAACACTAACGTGTCACTTTGTATTACATCATGCAAACAATTTACATTGTTCTAAGAAACGAGAACTAACCGAGTTTCGAGTGACAAAAACTGCAGGGATGAATGCTATCTCAGGGCCATCAAACTGCACACACACTTCGTCAAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGAAAAATATAAAGATCTAAATGTTAGTTCTAGTTCAACTTTAGACATGATCAACCAAGGATGACAAAATGCACATAATTAAACTTATCCTTCCGTGCTCATGTATCTGGAGGCCATGAACACATCTATTAATCCAGAAATCCTTTATCTGATATATGATGCCTCGTTTTGAGCACATGATTCAACTTAAAAAATAAAATAAAATTGAACCTGTTAATCATTTGATGAAGCAACCCATGAGCATGAGAGAGTGAT]
consensusID : consensus_6652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence
[GCGCTCCCACCCGCGCCTCACCGCCGACAGCGCTCGCCCTCCACCCCGCCCGCCGCCGCCGACTCCTCGTGCCCTCCTACCACCTGTCGGCGTGACCAGGCAGCCGCCGACGCCTGCGCACACCCTCCCGCCAGCCCTCAATCCGCCCTTTTTGGTTTGGTCACATGATTCAGTTGCCAAAACACCCGTCACCGCAAGTCCACACGCCCTCCACCAATCTTGACCAATGACGCTGGCGCCATCGAACGACACGGCAGGTCAAAGGATCAGCATTGATAATTCCTGTCGTTGCAATCATCTTCCATGCGGGATCCAGATTCATGGCGTCATAAGAGAGAACAACTGGAACCTTACTTATTTTTTTTCTGCATTCTTTGCAATATACCATGAAGTTCTACTTTACTATTGTTTGGACCTGCTACTAATACTTCGTCTATTTTCTTAAACAGGTTCTATGTCTGTTACTCCCACTCATGGAAGGGCTCCCGTAGGAGACATCATAAAAGTAGGGGTTGCCAAACAAAACATAACCCATCACATTAAGAATTTAGCTTCCTTTGGTGCTACCCAAACCTGTTCAGGAATCATGAAAATGATAGAAAATCCTGGAGCTAATTTCTGGTGTTGTTCCACTATACAACCCTACGGAAATCGGAGGCAGCTTCTTAATACAATGAACAACGTTGGCAACTCTACACCAGATTCATCAACAGAGTCAGGTCTATTCTTTCCAAAGTTT]
[+] EMBL CB619408 [GCGCTCCCACCCGCGCCTCACCGCCGACAGCGCTCGCCCTCCACCCCGCCCGCCGCCGCCGACTCCTCGTGCCCTCCTACCACCTGTCGGCGTGACCAGGCAGCCGCCGACGCCTGCGCACACCCTCCCGCCAGCCCTCAATCCGCCCTTTTTGGTTTGGTCACATGATTCAGTTGCCAAAACACCCGTCACCGCAAGTCCACACGCCCTCCACCAATCTTGACCAATGACGCTGGCGCCATCGAACGACACGGCAGGTCAAAGGATCAGCATTGATAATTCCTGTCGTTGCAATCATCTTCCATGCGGGATCCAGATTCATGGCGTCATAAGAGAGAACAACTGGAACCTTACTTATTTTTTTTCTGCATTCTTTGCAATATACCATGAAGTTCTACTTTACTATTGTTTGGACCTGCTACTAATACTTCGTCTATTTTCTTAAACAGGTTCTATGTCTGTTACTCCCACTCATGGAAGGGCTCCCGTAGGAGACATCATAAAAGTAGGGGTTGCCAAACAAAACATAACCCATCACATTAAGAATTTAGCTTCCTTTGGTGCTACCCAAACCTGTTCAGGAATCATGAAAATGATAGAAAATCCTGGAGCTAATTTCTGGTGTTGTTCCACTATACAACCCTACGGAAATCGGAGGCAGCTTCTTAATACAATGAACAACGTTGGCAACTCTACACCAGATTCATCAACAGAGTCAGGTCTATTCTTTCCAAAGTTT]
consensusID : consensus_6652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTGAATTGGCAAGCATCTCAAATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAGCAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAACGCATCCCACGAGTTTCGAGTGACAGAAACTGCAGGGATAAATGCCATCTCAGGGCCATCAAACCGCACACGCACTTCGTCGAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGACTCTGTTGATGAATCTGGTGTAGAGTTGCCAACGTTGTTCATTGTATTAAGAAGCTGCCTCCGATTTCCGTAGGGTTGTAAAATGGAACAATACCAGAAATTAGCTCCAGGATTTTCTATCCTTTTCATGATTCCTGAACAGGTTTGGGTAGCACCAAAGGAAGCTAAATTCTTAATGTGATGGGTTATGTTTTGTTTGGCAACCCCTACTTTTATGATGTCTCCTACGGGAGCCCTTCCATGAGTGGGAGTAACAGACATAGACCCTTTGTCTCGTCCTCTGGCTCACCTAAATCA]
[+] EMBL CA760852 [TTTTTTTTGAATTGGCAAGCATCTCAAATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAGCAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAACGCATCCCACGAGTTTCGAGTGACAGAAACTGCAGGGATAAATGCCATCTCAGGGCCATCAAACCGCACACGCACTTCGTCGAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGACTCTGTTGATGAATCTGGTGTAGAGTTGCCAACGTTGTTCATTGTATTAAGAAGCTGCCTCCGATTTCCGTAGGGTTGTAAAATGGAACAATACCAGAAATTAGCTCCAGGATTTTCTATCCTTTTCATGATTCCTGAACAGGTTTGGGTAGCACCAAAGGAAGCTAAATTCTTAATGTGATGGGTTATGTTTTGTTTGGCAACCCCTACTTTTATGATGTCTCCTACGGGAGCCCTTCCATGAGTGGGAGTAACAGACATAGACCCTTTGTCTCGTCCTCTGGCTCACCTAAATCA]
consensusID : consensus_6652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence
[TTTTGAATNGGGNAGCATCTCAGGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCGTGGACGTGGGGAAAAAATTCCGAGCAA]
[-] EMBL BM421272 [TTTTGAATNGGGNAGCATCTCAGGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCGTGGACGTGGGGAAAAAATTCCGAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6652#2 TTTTTTTTGAATTGGCAAGCATCTCAA-ATAAAACTTTCTCCCATAAATATCAACTCATA 59
consensus_6652#3 ----TTTTGAATNGGGNAGCATCTCAGGATAAAACTTTCTCCCATAAATATCAACTCATA 56
consensus_6652#0 ----------------AAGCATCTCAG-ATAAAACTTTCTCCCATAAATATCAACTCATA 43
consensus_6652#1 ------GCGCTCCCACCCGCGCCTCACCGCCGACAGCGCTCGC-----CCTCCACCCCGC 49
** **** * *** * ** ** *
consensus_6652#2 TCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCA 119
consensus_6652#3 TCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCA 116
consensus_6652#0 TCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGGCA 103
consensus_6652#1 CCGCCGCCGCCGACTCCTCGTGCCCTCCTACC-ACCTGTCGGCGTGACCAGG--CAGCC- 105
* ** * * ** * * * * * ** ** ** *** *
consensus_6652#2 AGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCC-TGGACTGAATCAG 178
consensus_6652#3 AGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCGTGGAC---GTGGG 173
consensus_6652#0 AGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCC-TGGACTGAATCAA 162
consensus_6652#1 -GCCGACGCCTGCGCACACCCTCCCGCCAGCCCTCAATCCGCCCTTTTTGGTT---TGGT 161
*** * *** * *** * * * * ** * * * *
consensus_6652#2 CAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTT 238
consensus_6652#3 GAAAAAATTCCG--AGCAA----------------------------------------- 190
consensus_6652#0 CAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTT 222
consensus_6652#1 CACATGATTCAGTTGCCAAAACACCCGTCACCGCAAGTCCACACGCCCTCCACCAATCTT 221
* * *** * *
consensus_6652#2 TGCCATAATATGTCCACGCAAAATAACGCATCCCAC---GAGTTTCGAGTGACA--GAAA 293
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 TGCCATAATATGTCCACGCAAAATAATGCATCCCACTGGAAATACATAATTACACTAAAA 282
consensus_6652#1 GACCAATGACGCTGGCGCCATCGAACGACACGGCAGGTCAAAGGATCAGCATTGATAATT 281
consensus_6652#2 CTGCAGGGATAA-ATGCCATCTCAGGGCCATCAAACC-----------GCACACGCACTT 341
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 TTAGAGTGTAAATATATCGTTAGCAGGTGAGCTTACCTGGAAAAATGAACACTAACGTGT 342
consensus_6652#1 CCTGTCGTTGCAATCATCTTCCATGCGGGATCCAGATTC--ATGGCGTCATAAGAGAGAA 339
consensus_6652#2 CGTCGAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGACTCTG 401
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 CACTTTGTATTACATCATGCAAACAATTTACATTGTTCTAAGAAACGAGAACTAACCGAG 402
consensus_6652#1 CAACTGGAACCTTACTTATTTTTTTTCTGCATTCTTTGCAATATACCATGAAGTTCTACT 399
consensus_6652#2 TT--GATGAATCTGGTGTAGAGTTGCCAACGTTGTTCATTGTATTAAGAAGCTGCCTCCG 459
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 TTTCGAGTGACAAAAACTGCAGGGATGAATGCTAT-CTCAGGGCCATCAAACTGCACACA 461
consensus_6652#1 TTACTATTGTTTGGACCTGCTACTAATACTTCGTCTATTTTCTTAAACAGGTTCTATGTC 459
consensus_6652#2 ATTTCCGTAGGGTTGTAAAATGGAACAATACCAGAAATTAGCTCCAGGATTTTCTATCCT 519
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 CACTTCGTCAAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGA 521
consensus_6652#1 TGTTACTCCCACTCATGGAAGGGCTCCCGTAGGAGACATCATAAAAGTAGGGGTTGCCAA 519
consensus_6652#2 ----TTTCATGATTCCTGAACAGGTTTGGGTAGCACCAAAGGAAGCTAAATTCTTAATGT 575
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 AAAATATAAAGATCTAAATGTTAGTTCTAGTT-CAACTTTAGACATGATCAACCAAGGAT 580
consensus_6652#1 ACAAAACATAACCCATCACATTAAGAATTTAGCTTCCTTTGGTGCTACCCAAACCTGTTC 579
consensus_6652#2 GATGGGTTATGTTTTGTTTGGCAACCCCTACTTTTATGATGTCTCCTACGG----GAGCC 631
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 GACAAAATGCACATAATTAAACTTATCCTTCCGTGCTCATGTATCTGGAGGCCATGAACA 640
consensus_6652#1 AGGAATCATGAAAATGATAGAAAATCCTGGAGCTAATTTCTGGTGTTGTTCCACTATACA 639
consensus_6652#2 CTTCCATGAGTGGGAGTAACAGACATAGACCCTTTGTCTCGTCCTCTGGCTCACCTAAAT 691
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 CATCTATTAATCCAGAAATCCTTTATCTGATATATGATGCCTCGTTTTGAGCACATGATT 700
consensus_6652#1 ACCCTACGGAAATCGGAGGCAGCTTCTTAATACAATGAACAACGTTGGCAACTCTACACC 699
consensus_6652#2 CA---------------------------------------------------------- 693
consensus_6652#3 ------------------------------------------------------------
consensus_6652#0 CAACTTAAAAAATAAAATAAAATTGAACCTGTTAATCATTTGATGAAGCAACCCATGAGC 760
consensus_6652#1 AGATTCATCAACAGAGTCAGGTCTATTCTTTCCAAAGTTT-------------------- 739
consensus_6652#2 -------------
consensus_6652#3 -------------
consensus_6652#0 ATGAGAGAGTGAT 773
consensus_6652#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||