cluster # 6655

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Oryza sativa
cluster # 6655 cluster # 6655 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6655#0 length = 1364 sequences # 3

consensus_6655#1 length = 436 sequences # 1

consensusID : consensus_6655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1364
fasta sequence

                              [CCCCCCCTCCTCCCTCCTCCGGTTGCCTCTCCGGCCTCGCCACCGCCATCGCCTTCGCCTCCCCGCCTCCCAACCGCCCCACGTTGCGGGGAGACAGCTCGCCGCGGGCGGCGATCATGGCGGCGGCGGAGGTGTACTCGCCGACGGCGGCGGCGGCGGCGCAGCAGCAGCAGCGGGGGAAGGTGGCGGCGCAGGCGTGGCAGGCGGTGGTGGGGTGGATCGGGTTCCTCCTCCAGGTCCTGCTCCAGATCCTCCGGGGCACCCCATCCTGCGCCCAGCTCCTCTCCTTCGTCGGGTTCCGCTACCCGCTCCTCTCCGGGCCGGCCGACTCCGAGCAGTCGCCGTCGGTGGCCTTCATGCCGCTCCGCTCCGAGATCCCGGCCGACACGGCCCCTGCGCCGACGCCCCCGCCGGAATCCCTGCAGCGCCTCACGGTTGTGCTTGATTTGGATGAAACTTTAGTTTCTGCATATGAATCATCCAGTCTTCCAGCTATTGTACGCACCCAAGCTGTTGAAGCTGGATTACATTGCTTTGACATGGAGTGCATATCCACTGAGAAGGATGTTGAAGGGAGAAACAAAGTGAATCATGTCACCGTTTTTGAACGTCCTGGTTTGCACGAGTTCTTGCAGAAAACTAGTGAATTTGCAGATCTTATTCTCTTTACAGCAGGTTTGGAAGGTTATGCAAGACCTTTAGTTGACAGAATAGATGTCCATAATAGATTCAAACTCCGTCTATATCGTCCATCAACTGTTACTACGGAATACAGAGAACATGTCAAAGATCTTTCTTGCGTGTCAAAAGATTTCTGCAGAGTTGTCATTGTTGACAACAACCCATTCAGTTTCATATTGCAACCTTTGAATGGAATACCCTGTGTTCCATTTTCAGCTGGACAACATAATGATAATCAGCTCATGGAAGTTATATTTCCACTTCTGAAGCATCTCTCTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTCCAAAAACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTGTTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGGTTCGTACAGAATTGCCATGTCTGAAGACAAAAGGAATTGTAATCTAGCAGAATGTTAGATTGGTATTTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAAGGTCATTGTTGATAGTTCAGTTAGTCTAATGGGTCTTAAAAGAAAA]

[+] EMBL AK068946             [CCCCCCCTCCTCCCTCCTCCGGTTGCCTCTCCGGCCTCGCCACCGCCATCGCCTTCGCCTCCCCGCCTCCCAACCGCCCCACGTTGCGGGGAGACAGCTCGCCGCGGGCGGCGATCATGGCGGCGGCGGAGGTGTACTCGCCGACGGCGGCGGCGGCGGCGCAGCAGCAGCAGCGGGGGAAGGTGGCGGCGCAGGCGTGGCAGGCGGTGGTGGGGTGGATCGGGTTCCTCCTCCAGGTCCTGCTCCAGATCCTCCGGGGCACCCCATCCTGCGCCCAGCTCCTCTCCTTCGTCGGGTTCCGCTACCCGCTCCTCTCCGGGCCGGCCGACTCCGAGCAGTCGCCGTCGGTGGCCTTCATGCCGCTCCGCTCCGAGATCCCGGCCGACACGGCCCCTGCGCCGACGCCCCCGCCGGAATCCCTGCAGCGCCTCACGGTTGTGCTTGATTTGGATGAAACTTTAGTTTCTGCATATGAATCATCCAGTCTTCCAGCTATTGTACGCACCCAAGCTGTTGAAGCTGGATTACATTGCTTTGACATGGAGTGCATATCCACTGAGAAGGATGTTGAAGGGAGAAACAAAGTGAATCATGTCACCGTTTTTGAACGTCCTGGTTTGCACGAGTTCTTGCAGAAAACTAGTGAATTTGCAGATCTTATTCTCTTTACAGCAGGTTTGGAAGGTTATGCAAGACCTTTAGTTGACAGAATAGATGTCCATAATAGATTCAAACTCCGTCTATATCGTCCATCAACTGTTACTACGGAATACAGAGAACATGTCAAAGATCTTTCTTGCGTGTCAAAAGATTTCTGCAGAGTTGTCATTGTTGACAACAACCCATTCAGTTTCATATTGCAACCTTTGAATGGAATACCCTGTGTTCCATTTTCAGCTGGACAACATAATGATAATCAGCTCATGGAAGTTATATTTCCACTTCTGAAGCATCTCTCTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTCCAAAAACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTGTTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGGTTCGTACAGAATTGCCATGTCTGAAGACAAAAGGAATTGTAATCTAGCAGAATGTTAGATTGGTATTTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTT                                                    ]
[+] EMBL CB671866             [             CTCCTCCGGTTGCCTCTCCGGCCTCGCCACCGCCATCGCCTTCGCCTCCCCGCCTCCCAACCGCCCCACGTTGCGGGGAGACAGCTCGCCGCGGGCGGCGATCATGGCGGCGGCGGAGGTGTACTCGCCGACGGCGGCGGCGGCGGCGCAGCAGCAGCAGCGGGGGAAGGTGGCGGCGCAGGCGTGGCAGGCGGTGGTGGGGTGGATCGGGTTCCTCCTCCAGGTCCTGCTCCAGATCCTCCGGGGCACCCCATCCTGCGCCCAGCTCCTCTCCTTCGTCGGGTTCCGCTACCCGCTCCTCTCCGGGCCGGCCGACTCCGAGCAGTCGCCGTCGGTGGCCTTCATGCCGCTCCGCTCCGAGATCCCGGCCGACACGGCCCCTGCGCCGACGCCCCCGCCGGAATCCCTGCAGCGCCTCACGGTTGTGCTTGATTTGGATGAAACTTTAGTTTCTGCATATGAATCATCCAGTCTTCCAGCTATTGTACGCACCCAAGCTGTTGAAGCTGGATTACATTGCTTTGACATGGAGTGCATATCCACTGATAAGGATGTTGAAGGGAGAAACAAAGTGAATCATGTCACCGTTTTTGAACGTCCTGGTTTGCACGAGTTCTTGCAGAAAACTAGTGAATTTGCAGATCTTATTCTCTTTACAGCAGGTTTGGAAGGTTATGCAAGACCTATAGTTGACAGAATAGATGTCCATAATAGATTCCAACTCCGTCTATATCGGCCATCAACTGTTACTACCGAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB671867             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTATTCTCTTTACAGCAGGTTTGGAAGGTTATGCAAGACCTTTAGTTGACAGAATAGATGTCCATAATAGATTCAAACTCCGTCTATATCGTCCATCAACTGTTACTACGGAATACAGAGAACATGTCAAAGATCTTTCTTGCGTGTCAAAAGATTTCTGCAGAGTTGTCATTGTTGACAACAACCCATTCAGTTTCATATTGCAACCTTTGAATGGAATACCCTGTGTTCCATTTTCAGCTGGACAACATAATGATAATCAGCTCATGGAAGTTATATTTCCACTTCTGAAGCATCTCTCTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTCCAAAAACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTGTTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGGTTCGTACAGAATTGCCATGTCTGAAGACAAAAGGAATTGTAATCTAGCAGAATGTTAGATTGGTATTTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAAGGTCATTGTTGATAGTTCAGTTAGTCTAATGGGTCTTAAAAGAAAA]




>consensus_6655#0
CCCCCCCTCCTCCCTCCTCCGGTTGCCTCTCCGGCCTCGCCACCGCCATCGCCTTCGCCT
CCCCGCCTCCCAACCGCCCCACGTTGCGGGGAGACAGCTCGCCGCGGGCGGCGATCATGG
CGGCGGCGGAGGTGTACTCGCCGACGGCGGCGGCGGCGGCGCAGCAGCAGCAGCGGGGGA
AGGTGGCGGCGCAGGCGTGGCAGGCGGTGGTGGGGTGGATCGGGTTCCTCCTCCAGGTCC
TGCTCCAGATCCTCCGGGGCACCCCATCCTGCGCCCAGCTCCTCTCCTTCGTCGGGTTCC
GCTACCCGCTCCTCTCCGGGCCGGCCGACTCCGAGCAGTCGCCGTCGGTGGCCTTCATGC
CGCTCCGCTCCGAGATCCCGGCCGACACGGCCCCTGCGCCGACGCCCCCGCCGGAATCCC
TGCAGCGCCTCACGGTTGTGCTTGATTTGGATGAAACTTTAGTTTCTGCATATGAATCAT
CCAGTCTTCCAGCTATTGTACGCACCCAAGCTGTTGAAGCTGGATTACATTGCTTTGACA
TGGAGTGCATATCCACTGAGAAGGATGTTGAAGGGAGAAACAAAGTGAATCATGTCACCG
TTTTTGAACGTCCTGGTTTGCACGAGTTCTTGCAGAAAACTAGTGAATTTGCAGATCTTA
TTCTCTTTACAGCAGGTTTGGAAGGTTATGCAAGACCTTTAGTTGACAGAATAGATGTCC
ATAATAGATTCAAACTCCGTCTATATCGTCCATCAACTGTTACTACGGAATACAGAGAAC
ATGTCAAAGATCTTTCTTGCGTGTCAAAAGATTTCTGCAGAGTTGTCATTGTTGACAACA
ACCCATTCAGTTTCATATTGCAACCTTTGAATGGAATACCCTGTGTTCCATTTTCAGCTG
GACAACATAATGATAATCAGCTCATGGAAGTTATATTTCCACTTCTGAAGCATCTCTCTA
TCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTCCAAA
AACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTG
TTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTG
TACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGG
TTCGTACAGAATTGCCATGTCTGAAGACAAAAGGAATTGTAATCTAGCAGAATGTTAGAT
TGGTATTTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAAGG
TCATTGTTGATAGTTCAGTTAGTCTAATGGGTCTTAAAAGAAAA

consensusID : consensus_6655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [CTGTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTTCAAAAACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTGTTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGGTTCGTACAGAATTGCCATGTCTGAAGATAAAAGGAATTGTAATCTAGCAGAATGTTAGATTGGTATGTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAATTTCATCGTTGATAGTTCAGTTAGTCTAATTGGTATGCTGCCAGCATCCTGCTTGTTCCGTTCAAAAAAAAAA]

[+] EMBL BM421228             [CTGTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTTCAAAAACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTGTTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGGTTCGTACAGAATTGCCATGTCTGAAGATAAAAGGAATTGTAATCTAGCAGAATGTTAGATTGGTATGTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAATTTCATCGTTGATAGTTCAGTTAGTCTAATTGGTATGCTGCCAGCATCCTGCTTGTTCCGTTCAAAAAAAAAA]




>consensus_6655#1
CTGTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTT
TCAAAAACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGA
AATTGTTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGC
ACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGT
CAAGGTTCGTACAGAATTGCCATGTCTGAAGATAAAAGGAATTGTAATCTAGCAGAATGT
TAGATTGGTATGTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTA
AAATTTCATCGTTGATAGTTCAGTTAGTCTAATTGGTATGCTGCCAGCATCCTGCTTGTT
CCGTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6655#0      CCCCCCCTCCTCCCTCCTCCGGTTGCCTCTCCGGCCTCGCCACCGCCATCGCCTTCGCCT 60
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      CCCCGCCTCCCAACCGCCCCACGTTGCGGGGAGACAGCTCGCCGCGGGCGGCGATCATGG 120
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      CGGCGGCGGAGGTGTACTCGCCGACGGCGGCGGCGGCGGCGCAGCAGCAGCAGCGGGGGA 180
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      AGGTGGCGGCGCAGGCGTGGCAGGCGGTGGTGGGGTGGATCGGGTTCCTCCTCCAGGTCC 240
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      TGCTCCAGATCCTCCGGGGCACCCCATCCTGCGCCCAGCTCCTCTCCTTCGTCGGGTTCC 300
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      GCTACCCGCTCCTCTCCGGGCCGGCCGACTCCGAGCAGTCGCCGTCGGTGGCCTTCATGC 360
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      CGCTCCGCTCCGAGATCCCGGCCGACACGGCCCCTGCGCCGACGCCCCCGCCGGAATCCC 420
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      TGCAGCGCCTCACGGTTGTGCTTGATTTGGATGAAACTTTAGTTTCTGCATATGAATCAT 480
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      CCAGTCTTCCAGCTATTGTACGCACCCAAGCTGTTGAAGCTGGATTACATTGCTTTGACA 540
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      TGGAGTGCATATCCACTGAGAAGGATGTTGAAGGGAGAAACAAAGTGAATCATGTCACCG 600
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      TTTTTGAACGTCCTGGTTTGCACGAGTTCTTGCAGAAAACTAGTGAATTTGCAGATCTTA 660
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      TTCTCTTTACAGCAGGTTTGGAAGGTTATGCAAGACCTTTAGTTGACAGAATAGATGTCC 720
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      ATAATAGATTCAAACTCCGTCTATATCGTCCATCAACTGTTACTACGGAATACAGAGAAC 780
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      ATGTCAAAGATCTTTCTTGCGTGTCAAAAGATTTCTGCAGAGTTGTCATTGTTGACAACA 840
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      ACCCATTCAGTTTCATATTGCAACCTTTGAATGGAATACCCTGTGTTCCATTTTCAGCTG 900
consensus_6655#1      ------------------------------------------------------------
                                                                                  

consensus_6655#0      GACAACATAATGATAATCAGCTCATGGAAGTTATATTTCCACTTCTGAAGCATCTCTCTA 960
consensus_6655#1      -------------------------------------------------------CTGTA 5
                                                                             ** **

consensus_6655#0      TCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTCCAAA 1020
consensus_6655#1      TCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTTCAAA 65
                      ******************************************************* ****

consensus_6655#0      AACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTG 1080
consensus_6655#1      AACATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTG 125
                      ************************************************************

consensus_6655#0      TTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTG 1140
consensus_6655#1      TTTTGATGAAGGCTGAAACGCCTGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTG 185
                      ************************************************************

consensus_6655#0      TACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGG 1200
consensus_6655#1      TACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTGATAAAAATCAAGTCAAGG 245
                      ************************************************************

consensus_6655#0      TTCGTACAGAATTGCCATGTCTGAAGACAAAAGGAATTGTAATCTAGCAGAATGTTAGAT 1260
consensus_6655#1      TTCGTACAGAATTGCCATGTCTGAAGATAAAAGGAATTGTAATCTAGCAGAATGTTAGAT 305
                      *************************** ********************************

consensus_6655#0      TGGTATTTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAAGG 1320
consensus_6655#1      TGGTATGTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAATT 365
                      ****** ***************************************************  

consensus_6655#0      TCATTGTTGATAGTTCAGTTAGTCTAATGGGTCTTAAAAGAAAA---------------- 1364
consensus_6655#1      TCATCGTTGATAGTTCAGTTAGTCTAATTGGTATGCTGCCAGCATCCTGCTTGTTCCGTT 425
                      **** *********************** *** *      *  *                

consensus_6655#0      -----------
consensus_6655#1      CAAAAAAAAAA 436