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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 939 fasta sequence
[ATTGTTCGGATTCAAGAGTAGTCAGCCTCACTCTCTTCCTCCAAATCATTGGTGCTGCTGCTACTGTGTACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTTGCCAATGGTGAGCCACCGACGGGT-GCAGTGCAGACTAGCGGACAAGCGGTGTGAGCTCCGGGAGGAAGAGATGGAGTATATCCGGCAGTTCCACCGCCACGAGCCCAGCAGCAACCAGTGCACCTCGTTCGTCGCCAAGCATATCAAGGCGCCCCTCCAAACCGTTTGGTCACTAGTGAGGAGGTTTGATCAGCCACAACTTTTCAAACCTTTTGTGAGAAAGTGCGTAATGCGAGAAAACATTATTGTGACCGGATGTGTTAGGGAGGTCAATGTTCAAAGCGGGCTTCCAGCCACAAGGAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTTATTGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCATCGATGGCCAACTTGGAACATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAACACCAAAGACGACATATGCTATTTCATCGAGAACGTTCTCAGGTGCAACCTTATGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTTGATTGATGATCAGAATAATCCAT-ATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAACATCAGAGCTTCTTGATCGACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAATTAAGGCACTCACTTCAGT-TTACTACAAACATATGTGCAACTTTGTTACTTCGCTCGTGCAAAAAAATGTCGAACTGAGATGAAACAACGTTACTTTGATG]
[+] EMBL AK108261 [ATTGTTCGGATTCAAGAGTAGTCAGCCTCACTCTCTTCCTCCAAATCATTGGTGCTGCTGCTACTGTGTACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTTGCCAATGGTGAGCCACCGACGGGT GCAGTGCAGACTAGCGGACAAGCGGTGTGAGCTCCGGGAGGAAGAGATGGAGTATATCCGGCAGTTCCACCGCCACGAGCCCAGCAGCAACCAGTGCACCTCGTTCGTCGCCAAGCATATCAAGGCGCCCCTCCAAACCGTTTGGTCACTAGTGAGGAGGTTTGATCAGCCACAACTTTTCAAACCTTTTGTGAGAAAGTGCGTAATGCGAGAAAACATTATTGTGACCGGATGTGTTAGGGAGGTCAATGTTCAAAGCGGGCTTCCAGCCACAAGGAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTTATTGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCATCGATGGCCAACTTGGAACATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAACACCAAAGACGACATATGCTATTTCATCGAGAACGTTCTCAGGTGCAACCTTATGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTTGATTGATGATCAGAATAATCCAT ATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAACATCAGAGCTTCTTGATCGACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAATTAAGGCACTCACTTCAGT TTACTACAAACATATGTGCAACTTTGTTACTTCGCTCGTGCAAAAAAATGTCGAACTGAGATGAAACAACGTTACTTTGATG]
[+] EMBL AA751330 [ TACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTTGCCAATGGTGAGCCACCGACGGGTAGCAGTGCAGACTAGCGGACAAGC GTGTGAGCTCCGGGAGGAAGAGATGGAGTATATCCGGCAGTTCCATCGCCACGAGCCCACGACGAACCAGTG ]
[+] EMBL BI795882 [ TTCTTGGTTGATTGATGATCAGAATAATCCATGATATAAATTGGGGGGACCTTAGTGAAACTCTCAGGAAACATCAGAGCTTCTTGATCGAC TTGCATACTAAAGCTTGTTCTATAGAATTTAGA C ATCAAGGCACTCACTTCAGTGTTACTAC AACATAGGGGCAACTTTGTTACTTCGCTCGTGCAAAAAAATGTCGAACTGAAATGAAACA ]
consensusID : consensus_6662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[CCTCAAGTCAAGTTTATTGGGGGAAATCATATGTTGAAGAATTACTCATCCATCCTGACTGTCCACTCTGAGGTCATCGATGGCCAGCTTGGAACACTGGTGGTCGAATCATTTATTGTGGACGTTCTAGAAGGGAACACCAGAAGATGACATAAGCTATTTCATCGAGAACGTTCTCAGGTGTAACCTTAGGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCGCACCTTGCTTTCTTAGTTGATTAATGATCAGAATAATCCATATATAAAATTGGTGGACCGTATTGAAACTCTTAGAAAACACATAGCTTCTTGGTCGACATTGGATACTAAAGCTTCTTTTTTAGAATTTAGAGCATCAAGACACTCACTTCAGTTTACTACAGACATATGTGCAACTTTGTTGTTTACTTCACTCGTGCAAAAAATGTTGAACTGAAATGAAACCTTGATACTCTAAAGGATTGTATTCAGATTTCCTATTCATTAATTCATATGTCTTCTTCTTAGCTATGAAAAA]
[+] EMBL BI801433 [CCTCAAGTCAAGTTTATTGGGGGAAATCATATGTTGAAGAATTACTCATCCATCCTGACTGTCCACTCTGAGGTCATCGATGGCCAGCTTGGAACACTGGTGGTCGAATCATTTATTGTGGACGTTCTAGAAGGGAACACCAGAAGATGACATAAGCTATTTCATCGAGAACGTTCTCAGGTGTAACCTTAGGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCGCACCTTGCTTTCTTAGTTGATTAATGATCAGAATAATCCATATATAAAATTGGTGGACCGTATTGAAACTCTTAGAAAACACATAGCTTCTTGGTCGACATTGGATACTAAAGCTTCTTTTTTAGAATTTAGAGCATCAAGACACTCACTTCAGTTTACTACAGACATATGTGCAACTTTGTTGTTTACTTCACTCGTGCAAAAAATGTTGAACTGAAATGAAACCTTGATACTCTAAAGGATTGTATTCAGATTTCCTATTCATTAATTCATATGTCTTCTTCTTAGCTATGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6662#0 ATTGTTCGGATTCAAGAGTAGTCAGCCTCACTCTCTTCCTCCAAATCATTGGTGCTGCTG 60
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 CTACTGTGTACCGGAGATGAACGGCGCTGGTGGTGCGGGAGGAGCAGCGGCAGGGAAGTT 120
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 GCCAATGGTGAGCCACCGACGGGTGCAGTGCAGACTAGCGGACAAGCGGTGTGAGCTCCG 180
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 GGAGGAAGAGATGGAGTATATCCGGCAGTTCCACCGCCACGAGCCCAGCAGCAACCAGTG 240
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 CACCTCGTTCGTCGCCAAGCATATCAAGGCGCCCCTCCAAACCGTTTGGTCACTAGTGAG 300
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 GAGGTTTGATCAGCCACAACTTTTCAAACCTTTTGTGAGAAAGTGCGTAATGCGAGAAAA 360
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 CATTATTGTGACCGGATGTGTTAGGGAGGTCAATGTTCAAAGCGGGCTTCCAGCCACAAG 420
consensus_6662#1 ------------------------------------------------------------
consensus_6662#0 GAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTTAT 480
consensus_6662#1 ------------------------------------------CCTCAA-GTCAAGTTTAT 17
****** ***********
consensus_6662#0 TGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCAT 540
consensus_6662#1 TGGGGGAAATCATATGTTGAAGAATTACTCATCCATCCTGACTGTCCACTCTGAGGTCAT 77
****** ******************************* ** ****************
consensus_6662#0 CGATGGCCAACTTGGAACATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAA 600
consensus_6662#1 CGATGGCCAGCTTGGAACACTGGTGGTCGAATCATTTATTGTGGACGTTCTAGAAGGGAA 137
********* ********* ***************** * ***** *** *** *****
consensus_6662#0 CACCA-AAGACGACATATGCTATTTCATCGAGAACGTTCTCAGGTGCAACCTTATGACCC 659
consensus_6662#1 CACCAGAAGATGACATAAGCTATTTCATCGAGAACGTTCTCAGGTGTAACCTTAGGACCC 197
***** **** ****** **************************** ******* *****
consensus_6662#0 TTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTTG 719
consensus_6662#1 TTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCGCACCTTGCTTTCTTAGTTG 257
**************************************** *** ********* ****
consensus_6662#0 ATTGATGATCAGAATAATCCATATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAA 779
consensus_6662#1 ATTAATGATCAGAATAATCCATATATAAAATTGGTGGACCGTATTGAAACTCTTAGAAAA 317
*** ************************************ ************ ******
consensus_6662#0 CATCAGAGCTTCTTGATCGACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAAT 839
consensus_6662#1 CA-CATAGCTTCTTGGTCGACATTGGATACTAAAGCTTCTTTTTTAGAATTTAGAGCA-T 375
** ** ********* ********* ************ ** * ************** *
consensus_6662#0 TAAGGCACTCACTTCAGTTTACTACAAACATATGTGCAACTTTGTT----ACTTCGCTCG 895
consensus_6662#1 CAAGACACTCACTTCAGTTTACTACAGACATATGTGCAACTTTGTTGTTTACTTCACTCG 435
*** ********************* ******************* ***** ****
consensus_6662#0 TGCAAAAAAATGTCGAACTGAGATGAAACAACGTTACTTTGATG---------------- 939
consensus_6662#1 TGCAAAAAA-TGTTGAACTGAAATGAAACCTTGATACTCTAAAGGATTGTATTCAGATTT 494
********* *** ******* ******* * **** * * *
consensus_6662#0 ------------------------------------------
consensus_6662#1 CCTATTCATTAATTCATATGTCTTCTTCTTAGCTATGAAAAA 536
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||