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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1009 fasta sequence
[CCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACTCTCCCCTCTCCCCCTCCTCCTCCTCCTGCTTCACCCGCCTCTCGTGTGCCCAGATCTGGCAGATGAAACGCTTGATTTCTCATTTGGTTTGATTTTGATTCTTCTCATCTCTGATTTGGGATGTGGGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGTGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAGGTGAAGAAATTCAGAGCTACTCTGCAGGTCCAGAGACGGAGTAGTTTTGACTCTGCATCTTGAATCTAGATAACAGCA]
[+] EMBL AK059403 [CCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACTCTCCCCTCTCCCCCTCCTCCTCCTCCTGCTTCACCCGCCTCTCGTGTGCCCAGATCTGGCAGATGAAACGCTTGATTTCTCATTTGGTTTGATTTTGATTCTTCTCATCTCTGATTTGGGATGTGGGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGTGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAGGTGAAGAAATTCAGAGCTACTCTGCAGGTCCAGAGACGGAGTAGTTTTGACTCTGCATCTTGAATCTAGATAACAGCA]
[+] EMBL AU075753 [ CTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGTTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAA CCTGG AATTTTAGTAG ACNTCGA TA TAGTGT GATTT CG AAG GTAA NTGT AATTG GCAA ]
consensusID : consensus_6683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[CCCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGT]
[+] EMBL AK102002 [CCCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGT]
consensusID : consensus_6683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GGTTAANANNGGGGNAGGGAATAATCAGTGAGNGGNGGNANAAAAGGGGGAGCACCAAGCATNTCCAATNACAGCAGGGCCGNACTAAGCTTGGAGTTCAAGGGACCAAGACTAATAATTCATNTGCAGTTACGGTACTGNTTCGGCGGCATGCGCTTCCAAATCAAGACCGAGAAGNTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTNTTNTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGCGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAAAAAAAAAA]
[-] EMBL AA752126 [GGTTAANANNGGGGNAGGGAATAATCAGTGAGNGGNGGNANAAAAGGGGGAGCACCAAGCATNTCCAATNACAGCAGGGCCGNACTAAGCTTGGAGTTCAAGGGACCAAGACTAATAATTCATNTGCAGTTACGGTACTGNTTCGGCGGCATGCGCTTCCAAATCAAGACCGAGAAGNTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTNTTNTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGCGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6683#0 -CCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGA 59
consensus_6683#1 CCCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGA 60
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 GCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTT--GAGGGGGAGGAGGTGAGTG 117
consensus_6683#1 GCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTTTGAGGGGGAGGAGGTGAGTG 120
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 CAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGT 177
consensus_6683#1 CAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGT 180
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 GCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACA 237
consensus_6683#1 GCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACA 240
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 CCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTA 297
consensus_6683#1 CCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCG--- 297
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 CTCTCCCCTCTCCCCCTCCTCCTCCTCCTGCTTCACCCGCCTCTCGTGTGCCCAGATCTG 357
consensus_6683#1 ------------------------------------------------------------
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 GCAGATGAAACGCTTGATTTCTCATTTGGTTTGATTTTGATTCTTCTCATCTCTGATTTG 417
consensus_6683#1 ------------------------------------------------------------
consensus_6683#2 ------------------------------------------------------------
consensus_6683#0 GGATGTGGGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGG 477
consensus_6683#1 ------------TGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGG 345
consensus_6683#2 ------------------------GGTTAANANNGGGGNAGGGAAT---AATCAGTGAGN 33
* ** * * * ** * * *
consensus_6683#0 CGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCT 537
consensus_6683#1 CGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCT 405
consensus_6683#2 GGNGGNANAAAAGGGGGAGCACCA-----AGCATNTCCAATNACAGCA-GGGCCGNACTA 87
* ** * ** * * * * *** *** ***** ****** ****** **
consensus_6683#0 ACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCT 597
consensus_6683#1 ACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCT 465
consensus_6683#2 AG--CTTGGAGTTCAA-GGGACCAAGAC-TAATAATTCATNTGCAGTTACGG-TACTGNT 142
* *** *** **** * ********* ** ** ***** ***** ***** ***** *
consensus_6683#0 TCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCG 657
consensus_6683#1 TCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCG 525
consensus_6683#2 TCGGCGGCATGCGCTTCCAAATCAAGACCGAGAAGNTCCCGCCACCGTCCCCGCCGGCCG 202
************** ******************** ************************
consensus_6683#0 CCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCG 717
consensus_6683#1 CCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCG 585
consensus_6683#2 CCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTNTTNTACGCCG 262
************************************************* ** *******
consensus_6683#0 CCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGT 777
consensus_6683#1 CCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGT 645
consensus_6683#2 CCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGT 322
************************************************************
consensus_6683#0 TGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAAC 837
consensus_6683#1 TGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAAC 705
consensus_6683#2 TGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAAC 382
************************************************************
consensus_6683#0 CCTGGAAATTTTAGTAGAACCTCGATTATTAGTGTGGATTTGCGTAAGCCGTAAGCTGTC 897
consensus_6683#1 CCTGGAAATTTTAGTAGAACCTCGATTATTAGTGT------------------------- 740
consensus_6683#2 CCTGGAAATTTTAGTAGAACCTCGATTATTAGTGCGGATTTGCGTAAGCCGTAAGCTGTC 442
**********************************
consensus_6683#0 AATTGAGCAAAGATCAGTCAATCATTCTACCAAGGTGAAGAAATTCAGAGCTACTCTGCA 957
consensus_6683#1 ------------------------------------------------------------
consensus_6683#2 AATTGAGCAAAGATCAGTCAATCATTCTACCAAAAAAAAAAA------------------ 484
consensus_6683#0 GGTCCAGAGACGGAGTAGTTTTGACTCTGCATCTTGAATCTAGATAACAGCA 1009
consensus_6683#1 ----------------------------------------------------
consensus_6683#2 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||