cluster # 6684

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Oryza sativa
cluster # 6684 cluster # 6684 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6684#0 length = 831 sequences # 3

consensus_6684#1 length = 287 sequences # 1

consensusID : consensus_6684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 831
fasta sequence

                              [ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCCGGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTCGACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGCCGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAA-CCCTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAC-GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCT-GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG-CCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSRNAATH2            [ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCCGGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTCGACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGCCGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAA CCCTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAC GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCT GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG CCATGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB680742             [                                                                                                                                                                                                                                       GCAAAAATCCCTCTCCCGGAAGGGATGGGGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAG GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCTCTCAAGTTTCCTGCTGCT GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG CCCAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTGCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTAAACATTGTAGTGGTTtaa                                                             ]
[+] EMBL BM419666             [                                                                                                                                                                                                                                                                                                                                    TTCGTGTGAGACGACAGACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTCGCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACGCCCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGC        TAAAAAAAAAA            ]




>consensus_6684#0
ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCC
GGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTC
GACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGC
CGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAACC
CTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGC
GCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGACGACGCCCAAGCCCAAGGCCGAA
AGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTGCTGCTGTTGTTTCATGTGGA
GTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGAT
GACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAG
TTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTAT
CCTGTATCTGTTGTCACGCACGCCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTG
ATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATC
ATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAG
AACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA]

[+] EMBL BQ907693             [TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA]




>consensus_6684#1
TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGG
AGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAA
ATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGT
TTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCT
AGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6684#0      ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCC 60
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTC 120
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGC 180
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      CGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAACC 240
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      CTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGC 300
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGACGACGCCCAAGCCCAAGGCCGAA 360
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      AGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTGCTGCTGTTGTTTCATGTGGA 420
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGAT 480
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCA- 539
consensus_6684#1      ----------------------------------------TGGGTGTGGTGTNTTCAAGT 20
                                                               **  ******* **     

consensus_6684#0      GTTCGTGGTGTTGCT---GCT-ACCCT-TTTGTCG-CCGGAGCA-GCCTTTGCTTCCC-- 590
consensus_6684#1      GTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCA 80
                      **  *********     *** ***** ******  ******** *********** *  

consensus_6684#0      GGTGG-TGTATCCTGTATCTGTTGTCACGCACGCCAAGAAATTGCAAT--GCAATTT-TT 646
consensus_6684#1      GGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTT 140
                      ***** ***************************** ***********   ******* **

consensus_6684#0      AGTTGATCGTTTTGATT-CGGGGGAGATACTG-TCCGGGTTTGTGCTTCTTG-TTTCAGT 703
consensus_6684#1      AGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGT 200
                      ***************** ************** ******************* *******

consensus_6684#0      GTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGT 763
consensus_6684#1      GTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGT 260
                      ************************************************************

consensus_6684#0      GGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAA 823
consensus_6684#1      GGTTGATTTCAAGCAAGAAAAAAAAAA--------------------------------- 287
                      *******************    ***                                  

consensus_6684#0      AAAAAAAA 831
consensus_6684#1      --------