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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1638 fasta sequence
[AGGATACACGCATGCACGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCATAACCCGAGAAGCACCCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAACCAGCCGCGGCGTGCGGGGAAACTCATCGGATCATACAGATGCATGCACTCTTTGCCGTCGCCCGTGACACAGCCTTCTCATCGTCGCCGGCGGCCGACGAGCACCTCCCCAACGAGCACCCAGGCGGTCACCTCTGGAACCAGAGCGTCCTTAGCAGGGAAGAAGAGCATGGGAGCAACGACGACAGCTTCAGGGAGAGCCTCGTTTCTTTGCTTGACAACACGAGAGACTACGTGATGGCTCCCGAAGTGTTCGAGGGCGTCCCCGTGGCATGCGACTACCTCAAGGGGATGGACAGCGACGGCATGGCCGCATCAGCTGTCGCCGCCTATAGCCTGGACAACAACGGCCAGCACGCTAGTGTTAGTTCAATCGAGCATGGCATCGCTAGCTCGCCGCTGCTGGCGTACCAGCTGGGGAAGAACAGCGCTGTGGTGCAACGGAGCATCCAGCAGCAGGAGGTTGGATCTCCCATGGCCGCATTTCTGCAGCAACTGATTCCCACTAGTGTTCTCGATCAGTCTGGTATAGGGTTTGGGGGAGTTTGTCTGGACGGCTCAGCACTGGAGGCTTCGTTTTGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCACAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACACGGCTGGCAAGATCTTGTAGTAGCAGTGGAAGTGATCGTAACAAGAAGAAACTATCAGAGGTAAGAGGAGGAGGCAAAGCGAAGAAGTTCAAGTCAGAGACTTCACATAGTACATCTTCTCCCAAGCATCAATCACCCAAAGTGAAGCTGGGGGAGAAGATCACGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTGGACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTCTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGTCTCTAAACTTATAAGAGTGTCATATCTAGGTCCCTGAACTCTTAAAATGTATTTTAGGTTTTTGAACTTGTACTGCGTGTCATATATGTCCAAATGGATCCCGCNNCGCNCNACCCCACCCCCCNAGGGCGTGCGACGNCCCAACTTGAGGGGGGGCCCGGGACCCCAATTCGCCCTTTAGGGGGCCGATATTACCCCCCT]
[+] EMBL AK109094 [AGGATACACGCATGCACGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCATAACCCGAGAAGCACCCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAACCAGCCGCGGCGTGCGGGGAAACTCATCGGATCATACAGATGCATGCACTCTTTGCCGTCGCCCGTGACACAGCCTTCTCATCGTCGCCGGCGGCCGACGAGCACCTCCCCAACGAGCACCCAGGCGGTCACCTCTGGAACCAGAGCGTCCTTAGCAGGGAAGAAGAGCATGGGAGCAACGACGACAGCTTCAGGGAGAGCCTCGTTTCTTTGCTTGACAACACGAGAGACTACGTGATGGCTCCCGAAGTGTTCGAGGGCGTCCCCGTGGCATGCGACTACCTCAAGGGGATGGACAGCGACGGCATGGCCGCATCAGCTGTCGCCGCCTATAGCCTGGACAACAACGGCCAGCACGCTAGTGTTAGTTCAATCGAGCATGGCATCGCTAGCTCGCCGCTGCTGGCGTACCAGCTGGGGAAGAACAGCGCTGTGGTGCAACGGAGCATCCAGCAGCAGGAGGTTGGATCTCCCATGGCCGCATTTCTGCAGCAACTGATTCCCACTAGTGTTCTCGATCAGTCTGGTATAGGGTTTGGGGGAGTTTGTCTGGACGGCTCAGCACTGGAGGCTTCGTTTTGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCACAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACACGGCTGGCAAGATCTTGTAGTAGCAGTGGAAGTGATCGTAACAAGAAGAAACTATCAGAGGTAAGAGGAGGAGGCAAAGCGAAGAAGTTCAAGTCAGAGACTTCACATAGTACATCTTCTCCCAAGCATCAATCACCCAAAGTGAAGCTGGGGGAGAAGATCACGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTGGACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTCTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGTCTCTAAACTTATAAGAGTGTCATATCTAGGTCCCTGAACTCTTAAAATGTATTTTAGGTTTTTGAACTTGTACTGCGTGTCATATATGTCCAAATGGATCCC ]
[+] EMBL CA757334 [ CATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTGGACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTTTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGTCTCTAAACTTATGAGAGTGTCATATCTAGGTCCCTGAACTCTTAANATGTATTTTAGGTTTTTGAACTTGTACTGCGTGTCATATATGTCCAAAAAANAACAGCNNCGCNCNACCCCACCCCCCNAGGGCGTGCGACGNCCCAACTTGAGGGGGGGCCCGGGACCCCAATTCGCCCTTTAGGGGGCCGATATTACCCCCCT]
consensusID : consensus_6699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCATAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACATGGCTGGCAAGGTCTTGTAGTAGCAGTGGAAGTGATCCTAACAAGAAAAAATCAGAGGTAAGAGGGGGAGGCAAAGCGTCTGTTCAAGTCAGAGACTTCACATGGCACATCATCTCCCAAGTTTTAGTAACTAACAATATGGCAGAATAGTGGATTGACTTTGCAAACTGAGGAGTCAGCATTTGAAAAACTTGTTTCGAAACCACACGCAGCATCAATCGCCCAAAGTGAACCTGGGGGAGAAGATCATGGCTTTGCAGCAGATTATGTCACCTTTCGGGAAGACAGATACAGCGTCTGTCCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGGTACAGATGCTGGTGCTGAGTCCACTGCTTTCCTTGATGGTGGATCAATTGAGGAAGCTCCCTGCATTTCTGCAAGACTGCCTTCTTGTGAGCGGTCAGGTATCTGATGAGTTTTATCATATCNTACNNNNNNTGTGTTNNNNNNAATGNNNNNNNNATNGAT]
[+] EMBL CF196134 [TGCATGAGAACTTCTCCGGACGTCAGCTCTTTCAGTGGCCATAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAAGGGAGCAAGAAATTACATGGCTGGCAAGGTCTTGTAGTAGCAGTGGAAGTGATCCTAACAAGAAAAAATCAGAGGTAAGAGGGGGAGGCAAAGCGTCTGTTCAAGTCAGAGACTTCACATGGCACATCATCTCCCAAGTTTTAGTAACTAACAATATGGCAGAATAGTGGATTGACTTTGCAAACTGAGGAGTCAGCATTTGAAAAACTTGTTTCGAAACCACACGCAGCATCAATCGCCCAAAGTGAACCTGGGGGAGAAGATCATGGCTTTGCAGCAGATTATGTCACCTTTCGGGAAGACAGATACAGCGTCTGTCCTGTTGGAAACCATAACCTACATCAAATTTCTTCATGGTACAGATGCTGGTGCTGAGTCCACTGCTTTCCTTGATGGTGGATCAATTGAGGAAGCTCCCTGCATTTCTGCAAGACTGCCTTCTTGTGAGCGGTCAGGTATCTGATGAGTTTTATCATATCNTACNNNNNNTGTGTTNNNNNNAATGNNNNNNNNATNGAT]
consensusID : consensus_6699#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[CACGAGATTTCTGGCGCGATTAANANCNNGGTATATAGTCCACTNGGGTTTAGNNTGTACCAAAATATTNGTTTCTNCNGANAAACTGAAGGNNCTCANANTGCTCNCATCATNCCTACCCAAGCATATNNTCCCCNATCAGGAAACCCCCANCACCGTCTACNAAAATNGCCACTTCCATTTTGGTCCACCACCATAGGAATNTANGATNCACNCNTGCNCGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCANAACCCGAGAAGNACCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAANCANCCGCGGTGTGCGGGGAAACTCATCGGATCATACAGATGCNTGCACTCTTTGCCGTCGCCCGTGACACANCCTTCTCATCCTCNCCGGNGGCCGACGAACACTCCCCAACGANCACCANGCGGTCAC]
[+] EMBL AA753082 [CACGAGATTTCTGGCGCGATTAANANCNNGGTATATAGTCCACTNGGGTTTAGNNTGTACCAAAATATTNGTTTCTNCNGANAAACTGAAGGNNCTCANANTGCTCNCATCATNCCTACCCAAGCATATNNTCCCCNATCAGGAAACCCCCANCACCGTCTACNAAAATNGCCACTTCCATTTTGGTCCACCACCATAGGAATNTANGATNCACNCNTGCNCGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCANAACCCGAGAAGNACCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAANCANCCGCGGTGTGCGGGGAAACTCATCGGATCATACAGATGCNTGCACTCTTTGCCGTCGCCCGTGACACANCCTTCTCATCCTCNCCGGNGGCCGACGAACACTCCCCAACGANCACCANGCGGTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6699#0 AGGATACACGCATGCACGGGTGTGCACTGCACCCAGCTGCATATCGTCGTATATTTCATA 60
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 ACCCGAGAAGCACCCGGAGCCACGGGCTGGTCGCTGCAGCTTCTCCTCCACTTCACCAAC 120
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CAGCCGCGGCGTGCGGGGAAACTCATCGGATCATACAGATGCATGCACTCTTTGCCGTCG 180
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CCCGTGACACAGCCTTCTCATCGTCGCCGGCGGCCGACGAGCACCTCCCCAACGAGCACC 240
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CAGGCGGTCACCTCTGGAACCAGAGCGTCCTTAGCAGGGAAGAAGAGCATGGGAGCAACG 300
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 ACGACAGCTTCAGGGAGAGCCTCGTTTCTTTGCTTGACAACACGAGAGACTACGTGATGG 360
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CTCCCGAAGTGTTCGAGGGCGTCCCCGTGGCATGCGACTACCTCAAGGGGATGGACAGCG 420
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 ACGGCATGGCCGCATCAGCTGTCGCCGCCTATAGCCTGGACAACAACGGCCAGCACGCTA 480
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 GTGTTAGTTCAATCGAGCATGGCATCGCTAGCTCGCCGCTGCTGGCGTACCAGCTGGGGA 540
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 AGAACAGCGCTGTGGTGCAACGGAGCATCCAGCAGCAGGAGGTTGGATCTCCCATGGCCG 600
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CATTTCTGCAGCAACTGATTCCCACTAGTGTTCTCGATCAGTCTGGTATAGGGTTTGGGG 660
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 GAGTTTGTCTGGACGGCTCAGCACTGGAGGCTTCGTTTTGCATGAGAACTTCTCCGGACG 720
consensus_6699#1 --------------------------------------TGCATGAGAACTTCTCCGGACG 22
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 TCAGCTCTTTCAGTGGCCACAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAA 780
consensus_6699#1 TCAGCTCTTTCAGTGGCCATAGGTCAGCAACCGCAGAAGAATTGATGTCTACAGACACAA 82
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 GGGAGCAAGAAATTACACGGCTGGCAAGATCTTGTAGTAGCAGTGGAAGTGATCGTAACA 840
consensus_6699#1 GGGAGCAAGAAATTACATGGCTGGCAAGGTCTTGTAGTAGCAGTGGAAGTGATCCTAACA 142
consensus_6699#2 ----------------------------------------------------------CA 2
**
consensus_6699#0 AGAAGAAACTATCAGAGGTAAGAGGAGGAGGCAAAGCGAAGAAGTTCAAGTCAGAGACTT 900
consensus_6699#1 AGAAAAA---ATCAGAGGTAAGAGGGGGAGGCAAAGCGTC--TGTTCAAGTCAGAGACTT 197
consensus_6699#2 CGAGATTTCTGGCGCGATTAANANCNNGGTATATAGTCCA----CTNGGGTTTAGNNTGT 58
** * *** * * * ** * ** *
consensus_6699#0 CACATAGTACATCTTCTCCCAAGCATCAATCACCCAAAGTGAAGCTGGGGGAGAAGATCA 960
consensus_6699#1 CACATGGCACATCATCTCCCAAGTTTTAGTAACTAACAATATGGC-AGAATAGTGGATT- 255
consensus_6699#2 ACCAAAATAT-TNGTTTCTNCNG----ANAAACTGAAGGNNC--TCANANTGCTCNCATC 111
** * * * ** * * ** *
consensus_6699#0 CGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGG 1020
consensus_6699#1 -GACTTTGCAAACTGAGGAGTCAGCATTTGAAAAACTTGTTTCGAAACCA---CACGCAG 311
consensus_6699#2 ATNCCTACCCAAGCATATNNTCCCCNATCAGGAAACC---CCCANCACCG------TCTA 162
* * * ** * * ** * *
consensus_6699#0 AAACCATAACCTACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATA 1080
consensus_6699#1 CATCAATCGCCCAAAGTGAACCTGGGGGAGAA-GATCATGGCTTTGCAGCAGAT--TATG 368
consensus_6699#2 CNAAAATNGCC-ACTTCCATTTTGGTCCACCA---CCATAGGAATNTANGATNC---ACN 215
** ** * * * * * * * * *
consensus_6699#0 TGACAAACAGCACAAACAAGGGTCATATTCACTGGGGAGGGGAAGGGAAGAGGAAGGCAG 1140
consensus_6699#1 TCACCTTTCGGGAAGACAGATACAGCGTCTGTCCTGTTG------GAAACCATAACCTAC 422
consensus_6699#2 CNTGCNCGGGTGTGCACTGCACCCAGCTGCATATCGTCGTA----TATTTCANAACCCGA 271
* ** * * * **
consensus_6699#0 GTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCC-CTG-TTTCCTGGACCTC 1198
consensus_6699#1 ATC---AAATTTCTTCATGGTACAGATGCTGGTGCTGAGTCCACTGCTTTCCTTGATGGT 479
consensus_6699#2 GAA--GNACCGGAGCCACGGGCTGGTCGCTGCAGCTTC-TCCTCCACTTCACCAANCANC 328
** * * *** *** * ** *
consensus_6699#0 TCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCT-CCGGCGTACAGGAACTACT 1257
consensus_6699#1 GGATCAAT--TGAGGAAGCTCCCTGCATTTCTGCAAGACTGCCTTCTTGTGAGCGGTCAG 537
consensus_6699#2 CGCGGTGTG-CGGGGAAACTCATCGGATCATACAGATGCNTGCACTCTTTGCCGTCGCCC 387
* * * * * * * * *
consensus_6699#0 TTTACCGATGAGCCCCATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGT 1317
consensus_6699#1 GTATCTGATGAGTTTTAT-CATATCNTACNNNNNNTG----TGTTNNNNNNAATGNNNNN 592
consensus_6699#2 GTGACACANCCTTCTCAT-CCTCNCCGGNGGCCGACG----AACACTCCCCAACGANCAC 442
* * * ** * * *
consensus_6699#0 GCAACGGCTACGTTGGGAAGATTTACTGTTTACTTACTCTATGTTTTTCAGTCCCCATGT 1377
consensus_6699#1 NNNATNGAT--------------------------------------------------- 601
consensus_6699#2 CANGCGGTCAC------------------------------------------------- 453
*
consensus_6699#0 TATATGTATTGCTGAGTCTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAGGCGGT 1437
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CTCTAAACTTATAAGAGTGTCATATCTAGGTCCCTGAACTCTTAAAATGTATTTTAGGTT 1497
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 TTTGAACTTGTACTGCGTGTCATATATGTCCAAATGGATCCCGCNNCGCNCNACCCCACC 1557
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 CCCCNAGGGCGTGCGACGNCCCAACTTGAGGGGGGGCCCGGGACCCCAATTCGCCCTTTA 1617
consensus_6699#1 ------------------------------------------------------------
consensus_6699#2 ------------------------------------------------------------
consensus_6699#0 GGGGGCCGATATTACCCCCCT 1638
consensus_6699#1 ---------------------
consensus_6699#2 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||