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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence
[TGCCGCTGAGGAGGAGGAGGAGGCGCTACTAATCCTCTCCGCCCGCCGCGCCGAGGGGATCTTGGATCGACGAGGAGGGGGAGGGGAGCAGATGCGGGCGAGCCGGCCGGTGGTGCACCCGGTGGAGGCGCCGCCGCCGGCAGCTTTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGAGGCCGGGGTTGGAGCAGGAGGTGGAGCGGCGGCGCATGGCGGGGAGAACGCGCAGCCACGAGGGGTGCGGATGAAGGACCCCCCCGGGGCGCCCGGGACGCCCGGCGGCCTCGGCCTCCGCCTCGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCCCTCCGTCTCCGCCTTCTGTTACCTTGTTGCAGCAGCCATCTTGCAATGCTTGTGGAGCCTTTCACTAGCCGTTGTTGATATTTATGCACTTCTTGTGAAGCGTTCTTTGCGGAATCCACAGGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTAACCCTAGGTGCAGCATGTGCATCA-GCAGGCATCACCGTGCTCATTGGCA-ATGACCTGAACATATG-CGCAAACCATCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCA-GATGAGGACACA-GCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCA-GGAGAAAACGTAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCTGCA--TTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTGATCTTCATTCCCGAGAAATATGCAGTTCACCTTTTGCATCAAAAAAAAAA]
[+] EMBL AK108244 [TGCCGCTGAGGAGGAGGAGGAGGCGCTACTAATCCTCTCCGCCCGCCGCGCCGAGGGGATCTTGGATCGACGAGGAGGGGGAGGGGAGCAGATGCGGGCGAGCCGGCCGGTGGTGCACCCGGTGGAGGCGCCGCCGCCGGCAGCTTTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGAGGCCGGGGTTGGAGCAGGAGGTGGAGCGGCGGCGCATGGCGGGGAGAACGCGCAGCCACGAGGGGTGCGGATGAAGGACCCCCCCGGGGCGCCCGGGACGCCCGGCGGCCTCGGCCTCCGCCTCGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCCCTCCGTCTCCGCCTTCTGTTACCTTGTTGCAGCAGCCATCTTGCAATGCTTGTGGAGCCTTTCACTAGCCGTTGTTGATATTTATGCACTTCTTGTGAAGCGTTCTTTGCGGAATCCACAGGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTAACCCTAGGTGCAGCATGTGCATCA GCAGGCATCACCGTGCTCATTGGCA ATGACCTGAACATATG CGCAAACAATCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCA GATGAGGACACA GCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCA GGAGAAAACGTAGTGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCTGCA ATTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTGATCTTCATTCCCGAGAAATATGCAGTT ]
[+] EMBL BI808259 [ CCCTAGGTGCAGCATGTGCATCA GCAGGCATCACCGTGCTCATTGGCACATGACCTGAACATATG C CCAACCATCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCACGATGAGGACACACGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCCACAGCCA GGAGAAAACGTAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTAC CATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCTGCT TTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTGATCTTCATTCCCGAGAAATATGCAGTTCACCTTTTGCATCAAAAAAAAAA]
[+] EMBL BI805074 [ ATCACGCAGGCATCACCGTGCTCATT GCC ATGACCTGAACATATGCCGC AACCATC CTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCA GATGAGGACACA GCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGC ACAGCCACGGAGAAAACGTAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACCAAATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCTGCATTTTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTTTGATGTGATCTTCATTCCCGAGAAAaaaaaaa ]
consensusID : consensus_6717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[GANNGTGCCGAATTCGGCACGAGCTTTCATCAGCTGGTTTGCACTTGCACNGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCANATGAGGACACAGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACGTAATGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCNAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCTGCAATTTTTTTTTTTTTTTTTTTTTCGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACANAGCTCAACGTGCCNATTT]
[+] EMBL BE229848 [GANNGTGCCGAATTCGGCACGAGCTTTCATCAGCTGGTTTGCACTTGCACNGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCANATGAGGACACAGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACGTAATGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCNAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCTGCAATTTTTTTTTTTTTTTTTTTTTCGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACANAGCTCAACGTGCCNATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6717#0 TGCCGCTGAGGAGGAGGAGGAGGCGCTACTAATCCTCTCCGCCCGCCGCGCCGAGGGGAT 60
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 CTTGGATCGACGAGGAGGGGGAGGGGAGCAGATGCGGGCGAGCCGGCCGGTGGTGCACCC 120
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 GGTGGAGGCGCCGCCGCCGGCAGCTTTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGAGGC 180
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 CGGGGTTGGAGCAGGAGGTGGAGCGGCGGCGCATGGCGGGGAGAACGCGCAGCCACGAGG 240
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 GGTGCGGATGAAGGACCCCCCCGGGGCGCCCGGGACGCCCGGCGGCCTCGGCCTCCGCCT 300
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 CGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCC 360
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 CTCCGTCTCCGCCTTCTGTTACCTTGTTGCAGCAGCCATCTTGCAATGCTTGTGGAGCCT 420
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 TTCACTAGCCGTTGTTGATATTTATGCACTTCTTGTGAAGCGTTCTTTGCGGAATCCACA 480
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 GGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTAACCCTAGGTGCAGC 540
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 ATGTGCATCAGCAGGCATCACCGTGCTCATTGGCAATGACCTGAACATATGCGCAAACCA 600
consensus_6717#1 ------------------------------------------------------------
consensus_6717#0 TCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGC 660
consensus_6717#1 -------GANNGTGCCGAATTCG-----GCACGAGCTTTCATCAGCTGGTTTGCACTTGC 48
* ** **** * ** **************************
consensus_6717#0 ACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCAGATGAGGACACAGCTTGTATTT 720
consensus_6717#1 ACNGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCANATGAGGACACAGCTTGTATTT 108
** *********************************** *********************
consensus_6717#0 AGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACG 780
consensus_6717#1 AGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACG 168
************************************************************
consensus_6717#0 TAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGT 840
consensus_6717#1 TAATGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGT 228
** ********************** **********************************
consensus_6717#0 CGAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCT 900
consensus_6717#1 CNAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCT 288
* ************************************ *********************
consensus_6717#0 GCA----------TTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGT 950
consensus_6717#1 GCAATTTTTTTTTTTTTTTTTTTTTCGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGT 348
*** ************ **********************************
consensus_6717#0 GATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTG 1010
consensus_6717#1 GATCTGAAAACACANAGCTCAACGTGCCNATTT--------------------------- 381
************** ************* ****
consensus_6717#0 ATCTTCATTCCCGAGAAATATGCAGTTCACCTTTTGCATCAAAAAAAAAA 1060
consensus_6717#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||