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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1114 fasta sequence
[AAGAAAAGGAAAAATCCGCCGGCGGCGGCGGCGGCCTCCGCCTCCGCCTTGAAGACCTGACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATGATCAATCAGAAGCTAAGGATAAGGGGAACAAGATAGATATTAAGTACGAGCTGACTTCTGCAATACTGAGTCTAAAGCATCAACAAGCATCTGGCAGGTTGAAGATGCCTTCAAGACTGCCAGCAAGATATCCCCATAATGTGGGACATTGTGCAGAGCTTATCATGAATTTGGGCATTGGAGAAGATGTTCATTGCTTAAATGTAATGAGATCGTGTAACCATGAGAACATATTACATCCTGGAATTATTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTA-GATATAAAATACATTCTCACCAAATTTTAAATCCAAGCTTAACTTCGTTTGTTGCCTAATCTTAATAGGNGNCTAATGGGGATGCAAAAGGACTGTCTTTAAAAAAAAA]
[+] EMBL AK071720 [AAGAAAAGGAAAAATCCGCCGGCGGCGGCGGCGGCCTCCGCCTCCGCCTTGAAGACCTGACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATGATCAATCAGAAGCTAAGGATAAGGGGAACAAGATAGATATTAAGTACGAGCTGACTTCTGCAATACTGAGTCTAAAGCATCAACAAGCATCTGGCAGGTTGAAGATGCCTTCAAGACTGCCAGCAAGATATCCCCATAATGTGGGACATTGTGCAGAGCTTATCATGAATTTGGGCATTGGAGAAGATGTTCATTGCTTAAATGTAATGAGATCGTGTAACCATGAGAACATATTACATCCTGGAATTATTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTA GATATAAAATACATTCTCACCAAA ]
[+] EMBL OSS13563A [ TTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTAGGATATAAAATACATTCTCACCAAATTTTAAATCCAAGCTTAACTTCGTTTGTTGCCTAATCTTAATAGGNGNCTAATGGGGATGCAAAAGG ]
[+] EMBL AU101775 [ nCCTTGAATGTTCTNCTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAANTTCCAGAGCAAGCTATGACCTGGGGTNTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGNCCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTA GATATAAAATACATTCTCACCAAATTTTAAATCCAAGCTTAA TTCGTTTGTTGCCTAATCTTAATA GAGACTAATGGGAATGCAAAAGTACTGTCTTTAAAAAAAAA]
consensusID : consensus_6849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[TCCAATTTCTGGGTGCTAAAGGCTTCACCACAGCTGTTTGGCAGGGTCGAAAATCCCTTCAAGGCTTACCAAGCAAAATATCCCCCCTAACGTGGGACCATTGTGCAGAGCTTCATCATGAATTTGGCCCTTGGAGAAGATGTTCCTTGGTTAAATGTAATGAGATCGTGTATCCCTAAGACCATTTTCCATCCTGGATTTTTTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCCGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAATACATATTGTTTCCTTGAATGTTCTACTCCCGTCGTGAAGCTCCCAAATTTTAGAAAAAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759841 [TCCAATTTCTGGGTGCTAAAGGCTTCACCACAGCTGTTTGGCAGGGTCGAAAATCCCTTCAAGGCTTACCAAGCAAAATATCCCCCCTAACGTGGGACCATTGTGCAGAGCTTCATCATGAATTTGGCCCTTGGAGAAGATGTTCCTTGGTTAAATGTAATGAGATCGTGTATCCCTAAGACCATTTTCCATCCTGGATTTTTTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCCGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAATACATATTGTTTCCTTGAATGTTCTACTCCCGTCGTGAAGCTCCCAAATTTTAGAAAAAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6849#0 AAGAAAAGGAAAAATCCGCCGGCGGCGGCGGCGGCCTCCGCCTCCGCCTTGAAGACCTGA 60
consensus_6849#1 ------------------------------------------------------------
consensus_6849#0 CCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGATTTCTATACC 120
consensus_6849#1 ------------------------------------------------------------
consensus_6849#0 ACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCT 180
consensus_6849#1 ------------------------------------------------------------
consensus_6849#0 TCAAAATGATCAATCAGAAGCTAAGGATAAGGGGAACAAGATAGATATTAAGTACGAGCT 240
consensus_6849#1 ---------------------------------------------------------TCC 3
*
consensus_6849#0 GACTTCTGCAATACTGAGTCTAAAGCATCA--ACAAGCATCTGGCAGG-TTGAAGATGCC 297
consensus_6849#1 AATTTCTG-GGTGCTAA-----AGGCTTCACCACAGCTGTTTGGCAGGGTCGAAAATCCC 57
* ***** * ** * * ** *** *** * ******* * *** ** **
consensus_6849#0 TTCAAGACTGCC--AGCAAGATATCCCCA-TAATGTGGGAC-ATTGTGCAGAGCTT-ATC 352
consensus_6849#1 TTCAAGGCTTACCAAGCAAAATATCCCCCCTAACGTGGGACCATTGTGCAGAGCTTCATC 117
****** ** * ***** ******** *** ******* ************** ***
consensus_6849#0 ATGAATTTGGGCATTGGAGAAGATGTTCATTGCTTAAATGTAATGAGATCGTGTAACCAT 412
consensus_6849#1 ATGAATTTGGCCCTTGGAGAAGATGTTCCTTGGTTAAATGTAATGAGATCGTGTATCCCT 177
********** * *************** *** ********************** ** *
consensus_6849#0 GAGAACATATTACATCCTGGAATTATTAAGGAAGTTATCATTGGTGACAGCTCCTTTAAT 472
consensus_6849#1 AAGACCATTTTCCATCCTGGATTTTTTAAGGAAGTTATCATTGGTGACAGCTCCTTTAAT 237
*** *** ** ********* ** ***********************************
consensus_6849#0 GTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCA 532
consensus_6849#1 GTGGCCCGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCA 297
****** *****************************************************
consensus_6849#0 ACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAG 592
consensus_6849#1 ACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAG 357
************************************************************
consensus_6849#0 ATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCAT 652
consensus_6849#1 ATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCAT 417
************************************************************
consensus_6849#0 GGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCAGTCGTGAAG 712
consensus_6849#1 GGGAACTTTTCTCTAGAGAATACATATTGTTTCCTTGAATGTTCTACTCCCGTCGTGAAG 477
******************** ***************************** *********
consensus_6849#0 CTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTG 772
consensus_6849#1 CTCCCAAATTTTAGAAAAAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTG 537
*** ************* ******************************************
consensus_6849#0 CGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCA 832
consensus_6849#1 CGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCA 597
************************************************************
consensus_6849#0 TGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCG 892
consensus_6849#1 TGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCG 657
************************************************************
consensus_6849#0 ATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGA 952
consensus_6849#1 ATAGCTTTAAAAAAAAAAAAAAAAAAAAA------------------------------- 686
********* * * ****
consensus_6849#0 GACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTAGATATAA 1012
consensus_6849#1 ------------------------------------------------------------
consensus_6849#0 AATACATTCTCACCAAATTTTAAATCCAAGCTTAACTTCGTTTGTTGCCTAATCTTAATA 1072
consensus_6849#1 ------------------------------------------------------------
consensus_6849#0 GGNGNCTAATGGGGATGCAAAAGGACTGTCTTTAAAAAAAAA 1114
consensus_6849#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||