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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1622 fasta sequence
[CTCCTCCCATGGCGGCGCGCCACCGCCGCCGGTGAGGCCATCGCCCGCCGCCTCAACCACCACCGAGCCCCGCCCTTCTCCGATCCCGACGACGACCCGCCGTTCACGCGGCTCGCGGAGCGCCCGCCTCGAGCTCCCTCGAAGAAGAAGAAGAAGGAGGAGGAGGACCAGGGCGGCAGGATCAGGCCGCCGGAGCCGGCGAGCTCCGACCTGCCGTTCGACTTCCGGTACTCCTACTCGGAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCGGGAGCCCACCCGGTTCTCGCCGTTCGGGCCCGGCCGGCTCGACCGGCCATGGGACGGCGTCGCCGCGGCGGCGGCGCGCGGGGAGGGTGCGGGTGCGGCGGCGACGAGCAGGGAGGAGGTTCTTGGCGAGCCGCTGGCGGAGGAGGAGGTGGCGCAGCTCGTGGAGAGGTACCGGCACAGCGACTGCTCCCGGCAGATCAATTTGGGCAAAGGCGGAGTGACACACAATATGATTGATGACATCCACAATCACTGGAGACGTGCAGAAGCTGTTAGGATCAAATGCCTGGGAGTGCCAACTCTTGACATGGACAATATATGCTTCCATCTTGAGGATAAAACAGGTGGGAAAGTAATCTACCGTAACATAAACATCCTTATCCTATACCGTGGTCGGAATTATGATCCGAAACAGCGGCCTCAAATACCACTAATGTTGTGGAAGCCACTTGCTCCTATTTACCCTAGGCTTGTGCAAAATGTTGCTGATGGTTTGACTTTCGAGAAAACTAAAGAATTGAGGAATACGGGATTAAATTCTTCACCTCTTATGAAATTAACTAGGAATGGTGTTTATGTCAATGTTGTTGATAGAGTGAGAGAGGCCTTCAAGACTGTGGAAGTTGTGAGGTTAGATTGCTCTCATGTTGGTAGCAGTGATTGCAAGAAAATCGGTGTGAAGCTAAGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGAGGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATATCAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGCTGAAAACCTATTACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGCTATCTGGAATTTGGAGTTGTCTGAAAGAGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCACATTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK107337 [CTCCTCCCATGGCGGCGCGCCACCGCCGCCGGTGAGGCCATCGCCCGCCGCCTCAACCACCACCGAGCCCCGCCCTTCTCCGATCCCGACGACGACCCGCCGTTCACGCGGCTCGCGGAGCGCCCGCCTCGAGCTCCCTCGAAGAAGAAGAAGAAGGAGGAGGAGGACCAGGGCGGCAGGATCAGGCCGCCGGAGCCGGCGAGCTCCGACCTGCCGTTCGACTTCCGGTACTCCTACTCGGAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCGGGAGCCCACCCGGTTCTCGCCGTTCGGGCCCGGCCGGCTCGACCGGCCATGGGACGGCGTCGCCGCGGCGGCGGCGCGCGGGGAGGGTGCGGGTGCGGCGGCGACGAGCAGGGAGGAGGTTCTTGGCGAGCCGCTGGCGGAGGAGGAGGTGGCGCAGCTCGTGGAGAGGTACCGGCACAGCGACTGCTCCCGGCAGATCAATTTGGGCAAAGGCGGAGTGACACACAATATGATTGATGACATCCACAATCACTGGAGACGTGCAGAAGCTGTTAGGATCAAATGCCTGGGAGTGCCAACTCTTGACATGGACAATATATGCTTCCATCTTGAGGATAAAACAGGTGGGAAAGTAATCTACCGTAACATAAACATCCTTATCCTATACCGTGGTCGGAATTATGATCCGAAACAGCGGCCTCAAATACCACTAATGTTGTGGAAGCCACTTGCTCCTATTTACCCTAGGCTTGTGCAAAATGTTGCTGATGGTTTGACTTTCGAGAAAACTAAAGAATTGAGGAATACGGGATTAAATTCTTCACCTCTTATGAAATTAACTAGGAATGGTGTTTATGTCAATGTTGTTGATAGAGTGAGAGAGGCCTTCAAGACTGTGGAAGTTGTGAGGTTAGATTGCTCTCATGTTGGTAGCAGTGATTGCAAGAAAATCGGTGTGAAGCTAAGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGAGGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATATCAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGCTGAAAACCTATTACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGCTATCTGGAATTTGGAGTTGTCTGAAAGAGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCACTTTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTT ]
[-] EMBL CA762445 [ AAGAAAATCGGTGTGAAGCTAAGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGAGGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATATCAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAGTTCCATGGGATGTCATGTGATCAGAACAAATTGTTGAAAACCTATTACGGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGCTATCTGGAATCTGGAGTTGTTTGAAAGAGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACAGTACAGACGCCCATTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTTTGCTATCCGAGCAGATATCAACCATTTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTTAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU033031 [ ATGAAGACCCTGCTCTATTTGANTGCTGAGCATTGAACAGTACAGACGCACATTGAATCATTTTTTCACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCAAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGAAGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAA ]
consensusID : consensus_6906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[TGGTGAAACCTATACGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGAGTATGACAGTTTCCTCAGCGTATCTGGAATTTGGAGTTGTCTGAAAGAGGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACACGTACAGACGCACACTTGAATCATTTGTTCACACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGCAGATATCCACCATCTAGATTAGGACATAGTATCAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGCCTTTTGAATTAGAAGGCGATCATTCAGACCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTATCCTGTTGATTCCTTGATGTGCACCAAGTCAAAAGGTGCTCCCTCCGGTCAAAAAAATTTAACGTTGAGAATAAGATGTGATCAATTTCTAAAAAAAAA]
[+] EMBL BI807735 [TGGTGAAACCTATACGGGTTACCAGAAACATTAGAAACCGCGCCGGTTGAGTATGACAGTTTCCTCAGCGTATCTGGAATTTGGAGTTGTCTGAAAGAGGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTGAGCATTGAACACGTACAGACGCACACTTGAATCATTTGTTCACACCTTGGAATGAGTACTGTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACATGTTCCTGCTGCTTCTGCTATCCGGCAGATATCCACCATCTAGATTAGGACATAGTATCAAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGCCTTTTGAATTAGAAGGCGATCATTCAGACCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTATCCTGTTGATTCCTTGATGTGCACCAAGTCAAAAGGTGCTCCCTCCGGTCAAAAAAATTTAACGTTGAGAATAAGATGTGATCAATTTCTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6906#0 CTCCTCCCATGGCGGCGCGCCACCGCCGCCGGTGAGGCCATCGCCCGCCGCCTCAACCAC 60
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 CACCGAGCCCCGCCCTTCTCCGATCCCGACGACGACCCGCCGTTCACGCGGCTCGCGGAG 120
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 CGCCCGCCTCGAGCTCCCTCGAAGAAGAAGAAGAAGGAGGAGGAGGACCAGGGCGGCAGG 180
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 ATCAGGCCGCCGGAGCCGGCGAGCTCCGACCTGCCGTTCGACTTCCGGTACTCCTACTCG 240
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GAGACGGACCCGGCGTGGAGGCCCATCGGGTTCCGGGAGCCCACCCGGTTCTCGCCGTTC 300
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GGGCCCGGCCGGCTCGACCGGCCATGGGACGGCGTCGCCGCGGCGGCGGCGCGCGGGGAG 360
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GGTGCGGGTGCGGCGGCGACGAGCAGGGAGGAGGTTCTTGGCGAGCCGCTGGCGGAGGAG 420
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GAGGTGGCGCAGCTCGTGGAGAGGTACCGGCACAGCGACTGCTCCCGGCAGATCAATTTG 480
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GGCAAAGGCGGAGTGACACACAATATGATTGATGACATCCACAATCACTGGAGACGTGCA 540
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GAAGCTGTTAGGATCAAATGCCTGGGAGTGCCAACTCTTGACATGGACAATATATGCTTC 600
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 CATCTTGAGGATAAAACAGGTGGGAAAGTAATCTACCGTAACATAAACATCCTTATCCTA 660
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 TACCGTGGTCGGAATTATGATCCGAAACAGCGGCCTCAAATACCACTAATGTTGTGGAAG 720
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 CCACTTGCTCCTATTTACCCTAGGCTTGTGCAAAATGTTGCTGATGGTTTGACTTTCGAG 780
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 AAAACTAAAGAATTGAGGAATACGGGATTAAATTCTTCACCTCTTATGAAATTAACTAGG 840
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 AATGGTGTTTATGTCAATGTTGTTGATAGAGTGAGAGAGGCCTTCAAGACTGTGGAAGTT 900
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GTGAGGTTAGATTGCTCTCATGTTGGTAGCAGTGATTGCAAGAAAATCGGTGTGAAGCTA 960
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 AGGGATTTGGTTCCATGTGTTCCCCTATTATTTAAAGACGAACAGATTATTCTCTGGAGA 1020
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 GGAAAGGTGAAACAGGAGAACTCTGTTTCACTTCAATTCAGTCCTGAACCATCATGATAT 1080
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 CAAGTGGCTTAAATACATGAGTTGCTAGAAGAACCCTGCTGCTTGGATTACTTCCATCAG 1140
consensus_6906#1 ------------------------------------------------------------
consensus_6906#0 TTCCATGGGATGTCATGTGATCAGAACAAATTGCTGAAAACCTATTACGGGGTTACCAGA 1200
consensus_6906#1 -------------------------------TGGTGAAA-CCTAT-ACGGG-TTACCAGA 26
** ***** ***** ***** ********
consensus_6906#0 AACATTAGAAACCGCGCCGGTTGATTATTACATTTCCTGCAGC-TATCTGGAATTTGGAG 1259
consensus_6906#1 AACATTAGAAACCGCGCCGGTTGAGTATGACAGTTTCCTCAGCGTATCTGGAATTTGGAG 86
************************ *** *** ** * **** ****************
consensus_6906#0 TTGTCTGAAAGAG-TTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTG 1318
consensus_6906#1 TTGTCTGAAAGAGGTTGCCAGTGTTGCATGAGATGAAGACCCTGCTCTATTTGAGTGCTG 146
************* **********************************************
consensus_6906#0 AGCATTGAACA-GTACAGACGCACA-TTGAATCATTTTTTCAC--CTTGGAATGAGTACT 1374
consensus_6906#1 AGCATTGAACACGTACAGACGCACACTTGAATCATTTGTTCACACCTTGGAATGAGTACT 206
*********** ************* *********** ***** ***************
consensus_6906#0 GTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACAT 1434
consensus_6906#1 GTGCTTCCAGCCAAGGGATTGATATCTTCCATCATCTGTTTCTTTGTTCAAATGGCACAT 266
************************************************************
consensus_6906#0 GTTCCTGCTGCTTCTGCTATCCGGGCAGATATCAACCATCTAGATTAGGACATAGTATCA 1494
consensus_6906#1 GTTCCTGCTGCTTCTGCTATCCGG-CAGATATCCACCATCTAGATTAGGACATAGTATCA 325
************************ ******** **************************
consensus_6906#0 AAAGTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAGGCCTTTTGAATTAGA 1554
consensus_6906#1 AA-GTTGAGAGGTACATCATGTTGTAACACTAGTGGTACAGACAG-CCTTTTGAATTAGA 383
** ****************************************** **************
consensus_6906#0 AGGCGATCATTCAGAGCCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTAAAAAAAAAAAA 1614
consensus_6906#1 AGGCGATCATTCAGA-CCTCAAATGAGGTTGTGGGCTTTGTGGCTGCTATCCTGTTGATT 442
*************** ********************************* *
consensus_6906#0 AAAAAAAA---------------------------------------------------- 1622
consensus_6906#1 CCTTGATGTGCACCAAGTCAAAAGGTGCTCCCTCCGGTCAAAAAAATTTAACGTTGAGAA 502
*
consensus_6906#0 ----------------------------
consensus_6906#1 TAAGATGTGATCAATTTCTAAAAAAAAA 530
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||