cluster # 6985

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Oryza sativa
cluster # 6985 cluster # 6985 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6985#0 length = 417 sequences # 2

consensus_6985#1 length = 371 sequences # 2

consensusID : consensus_6985#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 417
fasta sequence

                              [AGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCANTGCCGGGCCACTCCGCGGCGTACCGGTCGCCAGGTTCGTGTACGCGACGTCGTGCGT-GCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGAGAGCAAC-TGGATCGGGTANGTCGCGGTGGCCAACGACGAANGGAAAGGCTGCGCTCG]

[+] EMBL AU063927             [AGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCANTGCCGGGCCACTCCGCGGCGTACCGGTCGCCAGGTTCGTGTACGCGACGTCGTGCGT GCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGAGAGCAAC TGGATCGGGTANGTCGCGGTGGCCAACGACGAANGGAAAGGCTGCGCTCG]
[+] EMBL AU063871             [AGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCANTGCCGGGCCACTCCGCGGCGTACCGGTCGCCAGGTTCGTGTACGCGACGTCGTGCGTCGCCGTGCCGGAGCCGNTCATCCTCCGGTCCGCGTCG GCGCGCGCAGGTGCAGGGAGAGCAACTTNGATCGGGTACGTCGCGGTTGNCAACGACGA                  ]




>consensus_6985#0
AGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTG
GAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCT
CCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCA
CGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCG
GGCGCANTGCCGGGCCACTCCGCGGCGTACCGGTCGCCAGGTTCGTGTACGCGACGTCGT
GCGTGCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGA
GAGCAACTGGATCGGGTANGTCGCGGTGGCCAACGACGAANGGAAAGGCTGCGCTCG

consensusID : consensus_6985#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 371
fasta sequence

                              [CTAGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCNACTGGAACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCNAGATGGCGCAGGCAACGTACGACGCCTTCAACCACGANAAGCTNTCGCCGCACGCGGGCNTNTCGAGGTTCGCCGCGCGCCGNTTCTTCNAGCGGGCGCANTG-CCGGGCCACTCCGCGGCGTACCGGTTCGCCAGGTTCNTTTACGCAACGTCNTGCGTCGCCNTGCCGGAGCCGCTCATCCTCCGGTCCGNTTGGGCGCGCNCAAGGTTCANGGAAGAGCAA]

[+] EMBL C93624               [CTAGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCNACTGGAACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCNAGATGGCGCAGGCAACGTACGACGCCTTCAACCACGANAAGCTNTCGCCGCACGCGGGCNTNTCGAGGTTCGCCGCGCGCCGNTTCTTCNAGCGGGCGCANTG CCGGGCCACTCCG                                                                                                           ]
[+] EMBL AU063775             [  AGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCNACTGGAACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCNAGATGGCGCAGGCAACGTACGACGCCTTCAACCACGANAAGCTCTCGCCGCACGCGGGCNTCTNGAGGTTCGCCGCGCGCNGCTTCTTCNAGCGGGCGCANTGCCCGGGCCACTCCGCGGCGTACCGGTTCGCCAGGTTCNTTTACGCAACGTCNTGCGTCGCCNTGCCGGAGCCGCTCATCCTCCGGTCCGNTTGGGCGCGCNCAAGGTTCANGGAAGAGCAA]




>consensus_6985#1
CTAGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGG
TGGAGGGAGCTCCATGGTGAGAGCNACTGGAACGGCCTCCTGGACCCGTTCGACCTCGAC
CTCCGCCGCACCGTCATCCGCTACGGCNAGATGGCGCAGGCAACGTACGACGCCTTCAAC
CACGANAAGCTNTCGCCGCACGCGGGCNTNTCGAGGTTCGCCGCGCGCCGNTTCTTCNAG
CGGGCGCANTGCCGGGCCACTCCGCGGCGTACCGGTTCGCCAGGTTCNTTTACGCAACGT
CNTGCGTCGCCNTGCCGGAGCCGCTCATCCTCCGGTCCGNTTGGGCGCGCNCAAGGTTCA
NGGAAGAGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6985#0      --AGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGG 58
consensus_6985#1      CTAGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGG 60
                        **********************************************************

consensus_6985#0      TGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGAC 118
consensus_6985#1      TGGAGGGAGCTCCATGGTGAGAGCNACTGGAACGGCCTCCTGGACCCGTTCGACCTCGAC 120
                      ************************ ***** *****************************

consensus_6985#0      CTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAAC 178
consensus_6985#1      CTCCGCCGCACCGTCATCCGCTACGGCNAGATGGCGCAGGCAACGTACGACGCCTTCAAC 180
                      *************************** ************* ******************

consensus_6985#0      CACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAG 238
consensus_6985#1      CACGANAAGCTNTCGCCGCACGCGGGCNTNTCGAGGTTCGCCGCGCGCCGNTTCTTCNAG 240
                      ***** ***** *************** * ******************** ****** **

consensus_6985#0      CGGGCGCANTGCCGGGCCACTCCGCGGCGTACCGGT-CGCCAGGTTCGTGTACGCGACGT 297
consensus_6985#1      CGGGCGCANTGCCGGGCCACTCCGCGGCGTACCGGTTCGCCAGGTTCNTTTACGCAACGT 300
                      ************************************ ********** * ***** ****

consensus_6985#0      CGTGCGT-GCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCA-GGTGC 355
consensus_6985#1      CNTGCGTCGCCNTGCCGGAGCCGCTCATCCTCCGGTCCGN-TTGGGCGCGCNCAAGGTTC 359
                      * ***** *** ***************************  * * ****** ** *** *

consensus_6985#0      AGGGA-GAGCAACTGGATCGGGTANGTCGCGGTGGCCAACGACGAANGGAAAGGCTGCGC 414
consensus_6985#1      ANGGAAGAGCAA------------------------------------------------ 371
                      * *** ******                                                

consensus_6985#0      TCG 417
consensus_6985#1      ---