cluster # 699

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Oryza sativa
cluster # 699 cluster # 699 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_699#0 length = 302 sequences # 1

consensus_699#1 length = 283 sequences # 1

consensusID : consensus_699#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGCTTCCATTCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAAACATTAACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAATTTGGAAAACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGGGGATACCA]

[+] EMBL CF335959             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGCTTCCATTCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAAACATTAACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAATTTGGAAAACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGGGGATACCA]




>consensus_699#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGCTTCCAT
TCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGG
GCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAAACATTA
ACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAATTTGGAA
AACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGGGGATAC
CA

consensusID : consensus_699#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGCTTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAAACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAATTTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG]

[+] EMBL CF307796             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGCTTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCTGAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAAACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAATTTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG]




>consensus_699#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGC
TTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCT
GAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAA
ACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAAT
TTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_699#0      ------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTTGC 54
consensus_699#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCCATTTCGC 60
                           *************************************************** **

consensus_699#0      TTCCATTCACATATTATGAAGAAAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCT 114
consensus_699#1      TTCCCTTCACATATTATGAAGATAATCCCCTTTTTACATGAACAAAATGCCCTTTTGCCT 120
                     **** ***************** *************************************

consensus_699#0      GAAAGGGCAACACCCCTTCATAAAAACCCCCCAAAATAACTGGGACATGGGAACACAAAA 174
consensus_699#1      GAAAGGGCAACCCCCCTTCCTAAAAACCGCCCAAAATTACTGGGACATGGGAACCCAAAA 180
                     *********** ******* ******** ******** **************** *****

consensus_699#0      ACATTAACGGGCTTCAAGCAATCACTGGAAAATTTATAATGTTTTAAAAAGACAGCAAAT 234
consensus_699#1      ACATTAACGGGCTTCAAGCAATTACTGGGGATTTTTTAATGGTTTAAAAAGACAGCAAAT 240
                     ********************** *****  * *** ***** ******************

consensus_699#0      TTGGAAAACCCAAAACCCCCAGGTTTTTCACGGGTGCTTATTGCATTTTTTTGGGATGGG 294
consensus_699#1      TTGGGGAGCCCAAAACCCCCAGGGTTTTTACGGGTGGTTATTG----------------- 283
                     ****  * *************** **** ******* ******                 

consensus_699#0      GGATACCA 302
consensus_699#1      --------