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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence
[GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGNCGAGGAGCCGCCGCCGCCGGGNTGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGNCGCGCTGCGGGCAATCGAGCGCTACCGCGTGACGCTGCTGCCCGCGGNGCCGCCCGTGCTCGTCGCCATGGTCAAGTACGAGGAGGCGCGCCGCCGNGACCTNTTCTTCCTGCTGGTCATCGGCATCGGCGGGGTTCCCTAGGCCGCAAGTCGCGAGCAATTGGTTCGTTTTCCCAACGTGGAGTTTTTAAGGTACGTTAA]
[+] EMBL OSS3963A [GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGNCGAGGAGCCGCCGCCGCCGGGNTGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGNCGCGCTGCGGGCAATCGAGCGCTACCGCGTGACGCTGCTGCCCGCGGNGCCGCCCGTGCTCGTCGCCATGGTCAAGTACGAGGAGGCGCGCCGCCGNGACCTNTTCTTCCTGCTGGTCATCGGCATCGGCGGGGTTCCCTAGGCCGCAAGTCGCGAGCAATTGGTTCGTTTTCCCAACGTGGAGTTTTTAAGGTACGTTAA]
[+] EMBL OSS3910A [GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGCCGAGGAGCCGNCGCCGCCGGGGTGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGCTGCGGNCATTCGAGCGCTACCGCNTGACGCTGCTGCCCGCGGAGCCGCCCGTGCTCGTCGCCATGGTCAAGTACGAGGAGGCGCGCC ]
consensusID : consensus_6995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[TCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGACGAGGAGCCGNCGCCGCCGCGTGGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATGATGGTGCTCCGTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGTTGNGGCCATCGAGCGGTAACGGTGACGTTGTTGCCGCGGCGGCGCCGTGATCGTCGCATGGTCAAAGTACGAGAGGCGCGCGCGGACCTCTTCTCCTGTTGTCATCGCATCGCGGCGTTCCCTAGGCGGAGGTCGCCAGAATTNGTTTCGTTTTCCAAAGTGAGGTTTTTAAGGT]
[+] EMBL OSS4303A [TCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGCGAGGGAGGCCGCCGAGGCGACGAGGAGCCGNCGCCGCCGCGTGGACGCTGCTCCCCATCCCCCTGTTCCACGTGTTCGGGTTCATGATGGTGCTCCGTCCGTCTCCATGGGGGAGACCTCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGTTGNGGCCATCGAGCGGTAACGGTGACGTTGTTGCCGCGGCGGCGCCGTGATCGTCGCATGGTCAAAGTACGAGAGGCGCGCGCGGACCTCTTCTCCTGTTGTCATCGCATCGCGGCGTTCCCTAGGCGGAGGTCGCCAGAATTNGTTTCGTTTTCCAAAGTGAGGTTTTTAAGGT]
consensusID : consensus_6995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence
[GGACACGNCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGNGCTCATNTNGCTGCACGCCGACAACCGGGAGAAGGTCGCNAGGAAGGCCGCCGAGGCGNCNAGGAGCCGCCGNCGCCGGGGTTAACGNTGCTCCCNATCCNCNTTTTCCACGTTTTCGGTTTCATAA]
[+] EMBL OSS3837A [GGACACGNCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGATCACGCACCGCAACCTCATCGNGCTCATNTNGCTGCACGCCGACAACCGGGAGAAGGTCGCNAGGAAGGCCGCCGAGGCGNCNAGGAGCCGCCGNCGCCGGGGTTAACGNTGCTCCCNATCCNCNTTTTCCACGTTTTCGGTTTCATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6995#0 GGACACGGCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGAT 60
consensus_6995#1 -----------------TCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGAT 43
consensus_6995#2 GGACACGNCGGCGGTGCTCTACTCGTCGGGCACCACAGGGCGGGTCAAGGCCGTCGCGAT 60
*******************************************
consensus_6995#0 CACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGC 120
consensus_6995#1 CACGCACCGCAACCTCATCGCGCTCATGTCGCTGCACGCCGACAACCGGGAGAAGGTCGC 103
consensus_6995#2 CACGCACCGCAACCTCATCGNGCTCATNTNGCTGCACGCCGACAACCGGGAGAAGGTCGC 120
******************** ****** * ******************************
consensus_6995#0 GAGGGAGGCCGCCGAGGCGNCGAGGAGCCGCCGCCGCCGGG-NTGACGCTGCTCCCCATC 179
consensus_6995#1 GAGGGAGGCCGCCGAGGCGACGAGGAGCCGNCGCCGCCGCG-TGGACGCTGCTCCCCATC 162
consensus_6995#2 NAGGAAGGCCGCCGAGGCGNCNAGGAGCCGCCGNCGCCGGGGTTAACGNTGCTCCCNATC 180
*** ************** * ******** ** ***** * *** ******* ***
consensus_6995#0 CCCCTGTTCCACGTGTTCGGGTTCATNATGGTGCTCCGCTCCGTCTCCATGGGGGAGACC 239
consensus_6995#1 CCCCTGTTCCACGTGTTCGGGTTCATGATGGTGCTCCG-TCCGTCTCCATGGGGGAGACC 221
consensus_6995#2 CNCNTTTTCCACGTTTTCGGTTTCATAA-------------------------------- 208
* * * ******** ***** ***** *
consensus_6995#0 TCCGTGCTCATGGAGCGGTTCGACTTCATCGNCGCGCTGCGGGCAATCGAGCGCTACCGC 299
consensus_6995#1 TCCGTGCTCATGGAGCGGTTCGACTTCATCGCCGCGTTGNGGCCA-TCGAGCGGTAACG- 279
consensus_6995#2 ------------------------------------------------------------
consensus_6995#0 GTGACGCTGCTGCCCGCGGNGCCGCCCGTGCTCGTCGCCATGGTCAA-GTACGAGGAGGC 358
consensus_6995#1 GTGACGTTGTTGCC-GCGGCGGCGCC-GTGATCGTCGC-ATGGTCAAAGTACGAG-AGGC 335
consensus_6995#2 ------------------------------------------------------------
consensus_6995#0 GCGCCGCCGNGACCTNTTCTTCCTGCTGGTCATCGGCATCGGCGGGGTTCCCTAGGCCGC 418
consensus_6995#1 GCGC-GC--GGACCTCTTCT-CCTGTTG-TCATCG-CATCG-CGGCGTTCCCTAGGC-GG 387
consensus_6995#2 ------------------------------------------------------------
consensus_6995#0 AAGTCGCGAGCAATTGGTTCGTTTTCCCAACGTGGAGTTTTTAAGGTACGTTAA 472
consensus_6995#1 AGGTCGCCAG-AATTNGTTTCGTTTTCCAAAGTGAGGTTTTTAAGGT------- 433
consensus_6995#2 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||