cluster # 7021

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Oryza sativa
cluster # 7021 cluster # 7021 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7021#0 length = 764 sequences # 2

consensus_7021#1 length = 597 sequences # 1
consensus_7021#2 length = 339 sequences # 1

consensusID : consensus_7021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 764
fasta sequence

                              [TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGCATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATACTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGGAAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG]

[-] EMBL CA754491             [TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGCATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATACTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGGAAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGC                                                                                                                                                                               ]
[+] EMBL CB676395             [                         tCGCCGNTAAGTACCTTTTTTCTTATCCTCAAAAGTTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCCCGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGG AAAAAAAAAAACAAGGATAAGGTAAATGAGTTAGCTGTGAAAAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGCATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATACTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGGAAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG]




>consensus_7021#0
TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAG
TTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC
AGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGA
AAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGC
ATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATG
TCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGC
ATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATA
CTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGG
AAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCT
TAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGT
GCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAA
GGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTG
TATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG

consensusID : consensus_7021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [TTTTTTTTTTTTGCAATCTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATGTCATGAGTCTCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATGCAAGGAGCGGAATTCAAAACTACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC]

[+] EMBL CA763469             [TTTTTTTTTTTTGCAATCTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCCGTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATGTCATGAGTCTCTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATGCAAGGAGCGGAATTCAAAACTACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC]




>consensus_7021#1
TTTTTTTTTTTTGCAATCTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAA
AACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGG
GGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGAAAAAAAA
ACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGCATCGGTGGCC
GTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATGTCATGAGTCT
CTGACGATCTTAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCG
AAGCAAAGGTGCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTT
CTGTCAGCAAGGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAAT
CTTGAGTGTGTATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATGCAAGGA
GCGGAATTCAAAACTACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC

consensusID : consensus_7021#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [TTTTTTTTTTTTTTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGCATCGGTGGCCGTCTTCTGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTTTCTGACGATNTCGTGCNGAATTCGGCACGAGCTCGTGCAGAATCCT]

[-] EMBL BE228965             [TTTTTTTTTTTTTTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCACATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAGGGAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGCATCGGTGGCCGTCTTCTGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTTTCTGACGATNTCGTGCNGAATTCGGCACGAGCTCGTGCAGAATCCT]




>consensus_7021#2
TTTTTTTTTTTTTTCGCCGTTAAGTACCTTTTTTTTTACCCTCAAAAGTTAACAAAACAC
GTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTCAGGGAGGGGCAC
ATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAGGGAAAAAAAAACAAGG
ATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGCATCGGTGGCCGTCTTC
TGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATGTCATGAGTTTCTGACG
ATNTCGTGCNGAATTCGGCACGAGCTCGTGCAGAATCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7021#1      ---TTTTTTTTTTTTGCAATCTCG----CCGTTAAGTACCTTTTTTTTTACCCTCAAAAG 53
consensus_7021#2      ----TTTTTTTTTTT----TTTCG----CCGTTAAGTACCTTTTTTTTTACCCTCAAAAG 48
consensus_7021#0      TTCCTGTTTTTGGTGAGAGGCTCGTGCGCCGGTAAGTACCTTTTTTTTTACCCTCAAAAG 60
                          * *****  *       ***    *** ****************************

consensus_7021#1      TTAACAAAACACGTACAATTCTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC 113
consensus_7021#2      TTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC 108
consensus_7021#0      TTAACAAAACACGTACAATTNTGGGTTGCTTCACAAATTACAACATGAACATACAAAGTC 120
                      ******************** ***************************************

consensus_7021#1      AGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGA 173
consensus_7021#2      AGGGAGGGGCACATCAATNTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCA-GGGA 167
consensus_7021#0      AGGGAGGGGCACATCAATCTGGAACACATCAGGGTGTAGGAGAGAATGGAAACCAAGGGA 180
                      ****************** ************************************ ****

consensus_7021#1      AAAAAAAA---CAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGC 230
consensus_7021#2      AAAAAAAA---CAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTNGTCAGTTGC 224
consensus_7021#0      AAAAAAAAAAACAAGGATAAGGTAGATGAGTTAGCTGTGAAGAAAGTTTTTGTCAGCTGC 240
                      ********   *************************************** ***** ***

consensus_7021#1      ATCGGTGGCCGTCTTCTGAACATTCAAAACTTTGAGATGATCCCTGACCAGCAAAGGATG 290
consensus_7021#2      ATCGGTGGCCGTCTTCTGAACATTCAGAATTTTGAGATGATCCCTGACCAGCAGAGGATG 284
consensus_7021#0      ATCGGTGGCCGTCTTCTGAACATTCAGAACTTTGAGATGATCCCTGACCAGCAGAGGATG 300
                      ************************** ** *********************** ******

consensus_7021#1      TCATGAGTCTCTG--ACGATCTTAA-CATTTCTGAAG--GACAGCAT------------- 332
consensus_7021#2      TCATGAGTTTCTG--ACGATNTCG-----TGCNGAATTCGGCACGAG------------- 324
consensus_7021#0      TCATGAGTCTCTGCGGAGATGTAGAATAGAACCAAGATTAGCATGAGGCATATAACTTGC 360
                      ******** ****    *** *         *  *      **  *              

consensus_7021#1      ----CACAGTAA-GAATCAAGGTAACCATCGCGAAGCAAAGGTGCTCCAAGGAATGGCCG 387
consensus_7021#2      ----CTCGTGCA-GAATCCT---------------------------------------- 339
consensus_7021#0      ATTTTGCACAAACGATTTCACAGGCATAGTGTACTAAAGAGATGCTTCAGGATATGCATA 420
                            *    * ** *                                           

consensus_7021#1      CTGATGAAGTACCGGTTCACACTGT-ATACCTTTCTGTCAGCAAGGCCTTCAAATCTTGC 446
consensus_7021#2      ------------------------------------------------------------
consensus_7021#0      CTATTTACTGGAAGTGTAGAGCGATCATGTCCTTGAGTTGCTAGACCTATCATAATATGG 480
                                                                                  

consensus_7021#1      AAGAAGGTAAAA---ACCTGTGGCAAGAAACCAAAATCTTGAGTGTGTATATTTTGGAGG 503
consensus_7021#2      ------------------------------------------------------------
consensus_7021#0      AAAAAGGTTGAGCAGAACTATTCTATGGAACAGCCGTTCAAAAAATGTACCTGACGATCT 540
                                                                                  

consensus_7021#1      AAACA-------AGAATAGCATTGCAGGAATTG-CAATGCAAGGAGCGGAATTCAAAACT 555
consensus_7021#2      ------------------------------------------------------------
consensus_7021#0      TAACATTTCTGAAGGACAGCATCACAGTAAGAATCAAGGTAACCATCGCGAAGCAAAGGT 600
                                                                                  

consensus_7021#1      ACCCATAACCGCATATCATCAAGAACCCCTTGTCTCGTCCTC------------------ 597
consensus_7021#2      ------------------------------------------------------------
consensus_7021#0      GCTCCAAGGAATGGCCGCTGATGAAGTACCGGTTCACACTGTATACCTTTCTGTCAGCAA 660
                                                                                  

consensus_7021#1      ------------------------------------------------------------
consensus_7021#2      ------------------------------------------------------------
consensus_7021#0      GGCCTTCAAATCTTGCAAGAAGGTAAAAACCTGTGGCAAGAAACCAAAATCTTGAGTGTG 720
                                                                                  

consensus_7021#1      --------------------------------------------
consensus_7021#2      --------------------------------------------
consensus_7021#0      TATATTTTGGAGGAAACAAGAATAGCATTGCAGGAATTGCAATG 764