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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 996 fasta sequence
[GTAGCCCAGGGCGGCTAGGGTTTCGGTTTCCTCCGTCTCTCCAACAACTACCCGGACCCGCTCAACCCCGCCGCCGCCGCAGCAAACCCTAACCTGACGACCCCGCCCAGCCGCAGCCCGGAGCGGCGGCGGCGGCGCCGGGAGCTCCGGCTGCGCAGGCACAGGCTCCGCCGGCGCAGGCCCAGCCGCCCGCGCTCGACCTCGCCGAGCATCCCAAGGCCATGAGCCACGCGCTCGTCCTCGCCGCCAAGAAGTTTGATGCTCTTGTTTCTGCGTTGCCACTATCATCTGAAGAGGATCAGCTGAAAAGAATTAAAGAGCTACAGGCAGAGAATGAAGTTGTAGGCTCAGAGCTTCAGAAACAACTGGAAGCTGCAGAGCTGGAGCTGAAGCAAGTTGAGGCTCTGTTTAATGAAGCTACAGATCATTGTGTAAACTGGAAGAAGCCAGAGTAATAGGGATGAATGGAACGGAATCCATGTTGGAGTGATGAACAGATGAAAGTGGAGATGTGAATGCCAGCTGCCAGGGCTACAATGTAGACTAAGGTGGAGGATCAAGGGAGGCTGTGCACAAGCATTGTCCAGGAGGCCTGTGCGGATGAGGAATGAAGCCTAAGGCTGAGAGGGGCACTGACTGGAATGGGTGGAGCAGGGGGTCTCGATGAAGAACGGTTAGAGGTCAGGGAAGCTCTAGGAGAGGGGTCGAGTTGTTAGTCGATATATGACCGCGGTTAGCTGTCCGACGGTGCTTAATCGTACGATATAGACCATTCTAGTTACACAACATCTGGCTCACCTTTTCACAGCACATATACTACACACAGACGTAAAACGGATAACACGAGGAACTCTCTATGACAATGTGAGTCATCGGCGCGCAACGACTTGAGGGACGCGTGCGCCGTACTGACGTATGAACGTAACTGAAACGACGATCTACATACACAGCAGCGATAATCATAGAACGTACGTAGGAAGTGCTTCAGCCCACCAC]
[+] EMBL BE040722 [GTAGCCCAGGGCGGCTAGGGTTTCGGTTTCCTCCGTCTCTCCAACAACTACCCGGACCCGCTCAACCCCGCCGCCGCCGCAGCAAACCCTAACCTGACGACCCCGCCCAGCCGCAGCCCGGAGCGGCGGCGGCGGCGCCGGGAGCTCCGGCTGCGCAGGCACAGGCTCCGCCGGCGCAGGCCCAGCCGCCCGCGCTCGACCTCGCCGAGCATCCCAAGGCCATGAGCCACGCGCTCGTCCTCGCCGCCAAGAAGTTTGATGCTCTTGTTTCTGCGTTGCCACTATCATCTGAAGAGGATCAGCTGAAAAGAATTAAAGAGCTACAGGCAGAGAATGAAGTTGTAGGCTCAGAGCTTCAGAAACAACTGGAAGCTGCAGAGCTGGAGCTGAAGCAAGTTGAGGCTCTGTTTAATGAAGCTACAGATCATTGTGTAAACTGGAAGAAGCCAGAGTAATAGGGATGAATGGAACGGAATCCATGTTGGAGTGATGAACAGATGAAAGTGGAGATGTGAATGCCAGCTGCCAGGGCTACAATGTAGACTAAGGTGGAGGATCAAGGGAGGCTGTGCACAAGCATTGTCCAGGAGGCCTGTGCGGATGAGGAATGAAGCCTAAGGCTGAGAGGGGCACTGACTGGAATGGGTGGAGCAGGGGGTCTCGATGAAGAACGGTTAGAGGTCAGGGAAGCTCTAGGAGAGGGGTCGAGTTGTTAGTCGATATATGACCGCGGTTAGCTGTCCGACGGTGCTTAATCGTACGATATAGACCATTCTAGTTACACAACATCTGGCTCACCTTTTCACAGCACATATACTACACACAGACGTAAAACGGATAACACGAGGAACTCTCTATGACAATGTGAGTCATCGGCGCGCAACGACTTGAGGGACGCGTGCGCCGTACTGACGTATGAACGTAACTGAAACGACGATCTACATACACAGCAGCGATAATCATAGAACGTACGTAGGAAGTGCTTCAGCCCACCAC]
consensusID : consensus_7028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[AGAGGCCGAGCCAAGGGGGAGGGAAAAGAGGAGGAGGAGGAGATCCCCGCCGCCGAGGAGGGGGAGGAGATCCCCGGAGATGGACATCATCTCGCAGCTGCAGGAGCAGCTGAACGAGATGGCGATGGTGGCGGTGAACACCTTCGGGACGCTGCAGCGGGACGCGCCGCCGGTCCGCCTCTCCAACAACTACCCGGACCCGCGCTCGACCTCGCCGAGCATCCCAAGGCCATGAGCCACGCGCTCGTCCTTGCCGCCAAGAAGGCAGAGAATGAAGTTGTAGGCTCAGAGCTTCAGAAACAACTGGAAGCTGCAGAGCTGGAGCTGAAGCAAGTTGAGGCTCTGTTTAATGAAGCTACAGATCATTGTATAAACTTGAAGAAGCCAGAGTAATAGTTATCAATGTAACGGAATCCATTTTGGAGTCATGAACAGATGAAGGTGGAGATGTGAATGCCAGCTGCCAGTGCTACATGTAGACTCAGTTTTAGTATCAAGTTAGCTGATGCACAACGATATCCAGGAGTACTTGTTGGATTAGGAATTAAACCTAGTACTGTAATTTACAGTAACTTGAATAGTTTCAAGCTGGTTCATTTTATCAGAAATAATTTGAGCATAAAAAAAAAAAAAAAA]
[-] EMBL CA759501 [AGAGGCCGAGCCAAGGGGGAGGGAAAAGAGGAGGAGGAGGAGATCCCCGCCGCCGAGGAGGGGGAGGAGATCCCCGGAGATGGACATCATCTCGCAGCTGCAGGAGCAGCTGAACGAGATGGCGATGGTGGCGGTGAACACCTTCGGGACGCTGCAGCGGGACGCGCCGCCGGTCCGCCTCTCCAACAACTACCCGGACCCGCGCTCGACCTCGCCGAGCATCCCAAGGCCATGAGCCACGCGCTCGTCCTTGCCGCCAAGAAGGCAGAGAATGAAGTTGTAGGCTCAGAGCTTCAGAAACAACTGGAAGCTGCAGAGCTGGAGCTGAAGCAAGTTGAGGCTCTGTTTAATGAAGCTACAGATCATTGTATAAACTTGAAGAAGCCAGAGTAATAGTTATCAATGTAACGGAATCCATTTTGGAGTCATGAACAGATGAAGGTGGAGATGTGAATGCCAGCTGCCAGTGCTACATGTAGACTCAGTTTTAGTATCAAGTTAGCTGATGCACAACGATATCCAGGAGTACTTGTTGGATTAGGAATTAAACCTAGTACTGTAATTTACAGTAACTTGAATAGTTTCAAGCTGGTTCATTTTATCAGAAATAATTTGAGCATAAAAAAAAAAAAAAAA]
[+] EMBL C28319 [ AGGGAGAAGAGGAGGAGGAGGAGGTCGCCGGCG GGAGGAGGGGGACGAGATCNCCGGAGATGGACATCATCTCGCAGCTGCAGGAGCAGCTGAACGANATGGCGATGGTGGCGGTGAACACCTTCGGGACGCTNCANCGGGACG GCCGCCGGTCCGCCTCTCCAACAACTACCCGGACCCGCtc ]
consensusID : consensus_7028#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[GTTGCCACTATCATCTGAAGAGGATCAGCTGAAAAGAATTAAAGAGCTACAGGCAGAGAATGAAGTTGTAGGCACAGAGCTTCAGAAACAACTGGAAGCTGCTGAGCTGGAGCTGAAGCAAGTTGAGGCTCTTTTTAATGAAGCTACAGATCATTGTATAAACTTGAAGAAGCCAGAGTAATAGTTATCAATGTAACGGAACCCATTTTGGAGTCATGAACAGATGAAGGTGGAGATGTGAATGCCAGCTGCCGATGCTACATGTAGACTCAGTTTTAGTATCAAGTTAGCTGATGCTCAACAATATTCCAGTAGTACTTGTTGGATTAGGAATTAAACCTAGCNCTGTAATTTACAGTAACTTGAATAGTTTCAAGCTGGTTCGTTTAATCTGAAATAATTTGAGCATAACTTCATGTTTAAAAAA]
[+] EMBL AU222527 [GTTGCCACTATCATCTGAAGAGGATCAGCTGAAAAGAATTAAAGAGCTACAGGCAGAGAATGAAGTTGTAGGCACAGAGCTTCAGAAACAACTGGAAGCTGCTGAGCTGGAGCTGAAGCAAGTTGAGGCTCTTTTTAATGAAGCTACAGATCATTGTATAAACTTGAAGAAGCCAGAGTAATAGTTATCAATGTAACGGAACCCATTTTGGAGTCATGAACAGATGAAGGTGGAGATGTGAATGCCAGCTGCCGATGCTACATGTAGACTCAGTTTTAGTATCAAGTTAGCTGATGCTCAACAATATTCCAGTAGTACTTGTTGGATTAGGAATTAAACCTAGCNCTGTAATTTACAGTAACTTGAATAGTTTCAAGCTGGTTCGTTTAATCTGAAATAATTTGAGCATAACTTCATGTTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7028#1 ------------------------------------------------------------
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 GTAGCCCAGGGCGGCTAGGGTTTCGGTTTCCTCCGTCTCTCCAACAACTACCCGGACCCG 60
consensus_7028#1 AGAGGCCGAGCCAAGGGGGAGGGAAAAGAGGAGGAGGAGGAGATCCCC-GCCGCCGAGGA 59
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 CTCAACCCCGCCGCCGCCGCAGCAAACCCTAACCTGACGACCCCGCCCAGCCGCAGCCCG 120
consensus_7028#1 GGGGGAGGAGATCCCCGGAGATGGACATCATCTCGCAGCTGCAGGAGCAGCTGAACGAGA 119
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 GAGCGGCGGCGGCGGCGCCGGGAGCTCCGGCTGCGCAGGCACAGGCTCCGCCGGCGCAGG 180
consensus_7028#1 TGGCGATGGTGGCGGTGAACACCTTCGGGACGCTGCAGCGGGACGCGCCGCCGGTCCG-C 178
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 CCCAGCCGCCCGCGCTCGACCTCGCCGAG-CATCCCAAGGCCATGAGCCACGCGCTCGTC 239
consensus_7028#1 CTCTCCAACAACTACCCGGACCCGCGC---TCGACCTCGCCG--AGCATCCCAAGGCCAT 233
consensus_7028#2 ---------------------------------GTTGCCACT--ATCATCTGAAGAGGAT 25
consensus_7028#0 CTCGCCGCCAAGAAGTTTGATGCTCTTGTTTCTGCGTTGCCACTATCATCTGAAGAGGAT 299
* * **** *** **
consensus_7028#1 GAGCCACGCGCTCGTCCTTGCCGCCAAGAAGGCAGAGAATGAAGTTGTAGGCTCAGAGCT 293
consensus_7028#2 CAGCTGAAAAGAA----TTAAAGAGCTACAGGCAGAGAATGAAGTTGTAGGCACAGAGCT 81
consensus_7028#0 CAGCTGAAAAGAA----TTAAAGAGCTACAGGCAGAGAATGAAGTTGTAGGCTCAGAGCT 355
*** ** * *********************** *******
consensus_7028#1 TCAGAAACAACTGGAAGCTGCAGAGCTGGAGCTGAAGCAAGTTGAGGCTCTGTTTAATGA 353
consensus_7028#2 TCAGAAACAACTGGAAGCTGCTGAGCTGGAGCTGAAGCAAGTTGAGGCTCTTTTTAATGA 141
consensus_7028#0 TCAGAAACAACTGGAAGCTGCAGAGCTGGAGCTGAAGCAAGTTGAGGCTCTGTTTAATGA 415
********************* ***************************** ********
consensus_7028#1 AGCTACAGATCATTGTATAAACTTGAAGAAGCCAGAGTAATAGTTATCAATGTAACGGAA 413
consensus_7028#2 AGCTACAGATCATTGTATAAACTTGAAGAAGCCAGAGTAATAGTTATCAATGTAACGGAA 201
consensus_7028#0 AGCTACAGATCATTGTGTAAACTGGAAGAAGCCAGAGTAATAGGGATGAATGGAACGGAA 475
**************** ****** ******************* ** **** *******
consensus_7028#1 TCCATTTTGGAGTCATGAACAGATGAAGGTGGAGATGTGAATGCCAGCTGCCAGTGCTAC 473
consensus_7028#2 CCCATTTTGGAGTCATGAACAGATGAAGGTGGAGATGTGAATGCCAGCTGCCGATGCTAC 261
consensus_7028#0 TCCATGTTGGAGTGATGAACAGATGAAAGTGGAGATGTGAATGCCAGCTGCCAGGGCTAC 535
**** ******* ************* ************************ *****
consensus_7028#1 A-TGTAGACTCAGTTTTAGTATCAAGTTAGCTGATGCACAACGATAT-CCAGGAGTACTT 531
consensus_7028#2 A-TGTAGACTCAGTTTTAGTATCAAGTTAGCTGATGCTCAACAATATTCCAGTAGTACTT 320
consensus_7028#0 AATGTAGACTAAGGTGGAGGATCAAGGGAGGCTGTGCACAAGCATTGTCCAGGAGGCCTG 595
* ******** ** * ** ****** ** *** *** ** **** ** **
consensus_7028#1 GTTGGATTAGGAATTAAACCTAGTACTGTAATTTACAGTAACTTGAATAGTTTCAAGCTG 591
consensus_7028#2 GTTGGATTAGGAATTAAACCTAGCNCTGTAATTTACAGTAACTTGAATAGTTTCAAGCTG 380
consensus_7028#0 TGCGGATGAGGAATGAAGCCTAAGGCTGAGAGGGGCACTGACTGGAATGGGTG-GAGCAG 654
**** ****** ** **** *** * ** * *** **** * * *** *
consensus_7028#1 GTTCATTTTATCAGAAATAATTTGAGCATAAAAAAAAAAAAAAAA--------------- 636
consensus_7028#2 GTTCGTTTAATCTGAAATAATTTGAGCATAACTTCATGTTTAAAAAA------------- 427
consensus_7028#0 GGGGTCTCGATGAAGAACGGTTAGAGGTCAGGGAAGCTCTAGGAGAGGGGTCGAGTTGTT 714
* * ** ** ** *** * *
consensus_7028#1 ------------------------------------------------------------
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 AGTCGATATATGACCGCGGTTAGCTGTCCGACGGTGCTTAATCGTACGATATAGACCATT 774
consensus_7028#1 ------------------------------------------------------------
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 CTAGTTACACAACATCTGGCTCACCTTTTCACAGCACATATACTACACACAGACGTAAAA 834
consensus_7028#1 ------------------------------------------------------------
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 CGGATAACACGAGGAACTCTCTATGACAATGTGAGTCATCGGCGCGCAACGACTTGAGGG 894
consensus_7028#1 ------------------------------------------------------------
consensus_7028#2 ------------------------------------------------------------
consensus_7028#0 ACGCGTGCGCCGTACTGACGTATGAACGTAACTGAAACGACGATCTACATACACAGCAGC 954
consensus_7028#1 ------------------------------------------
consensus_7028#2 ------------------------------------------
consensus_7028#0 GATAATCATAGAACGTACGTAGGAAGTGCTTCAGCCCACCAC 996
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||