cluster # 7039

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Oryza sativa
cluster # 7039 cluster # 7039 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7039#0 length = 707 sequences # 2

consensus_7039#1 length = 526 sequences # 2

consensusID : consensus_7039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [TTCCTTTTTTTTTTTTTTTTTTT-----AAAACTACCATAGGCTACATCCTAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAAACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATAAACACTGTGTAAGAGTTCACATCTGGACAAATCCCCTTCCGGTGCATCTCCTCCCACACCGCACAACCCATCATGTAGTTCCTCCCGCCAAGGAAATATGACTTCATCATCATGTTGTATGTATGGATCGTAGGCTCAAGTCCCTTCTTTATCATCTTTTTATATATTCTTGCCGCATCATCTGGCATATTCCTATTCGTAAGTAGCTTAATGAGAG]

[+] EMBL CB648057             [ TCCTTTTTTTTTTTTTTTTTTT     AAAACTACCATAGGCTACATCCTAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAAACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATAAACACTGTGTAAGAGTTCACATCTGGACAAATCCCCTTCCGGTGCATCTCCTCCCACACCGCACAACCCATCATGTAGTTCCTCCCGCCAAGGAAATATGACTTCATCATCATGTTGTATGTATGGATCGTAGGCTCAAGTCCCTTCTTTATCATCTTTTTATATATTCTTGCCGCATCATCTGGCATATTCCTATTCGTAAGTAGCTTAATGAGAG]
[+] EMBL CA761582             [ttttTTTTTTTTTTTTTTTTTTTAAAAAAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAATTTGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTTTGATTAGGGACATTCCCCTTGTCTCGgcctct                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_7039#0
TTCCTTTTTTTTTTTTTTTTTTTAAAACTACCATAGGCTACATCCTAATTAACTGAATCA
TTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAA
ACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAA
AGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATT
AGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAAA
CGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTT
CCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCC
TTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATG
CCCATTAATAAACACTGTGTAAGAGTTCACATCTGGACAAATCCCCTTCCGGTGCATCTC
CTCCCACACCGCACAACCCATCATGTAGTTCCTCCCGCCAAGGAAATATGACTTCATCAT
CATGTTGTATGTATGGATCGTAGGCTCAAGTCCCTTCTTTATCATCTTTTTATATATTCT
TGCCGCATCATCTGGCATATTCCTATTCGTAAGTAGCTTAATGAGAG

consensusID : consensus_7039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 526
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA]

[+] EMBL CA762296             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTT                                           ]
[+] EMBL CB638051             [                                   CGTTACACATGACTGAACTAAAATAAAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACACTAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAAAGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAAATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTTTTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTTCACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGCAAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTATTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA]




>consensus_7039#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATA
AAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACAC
TAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAA
AGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAA
ATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTT
TTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTT
CACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGC
AAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTA
TTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7039#0      -----------TTCCTTTTTTTTTTTTTTTTTT-------------------------TA 24
consensus_7039#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCGTAACACATGACTGAACTAAAATA 60
                                 **  ******************                         **

consensus_7039#0      AAACTACCATAGGCTACATCCTAATTAACTGAATCATTTTGTTCACACATGAAAACACAC 84
consensus_7039#1      AAACTACCATAGGCTACATCATAATTAACTGAATCATTTTGTTCACACATGAAAACACAC 120
                      ******************** ***************************************

consensus_7039#0      TAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCACCTTTCTCCTAAAA 144
consensus_7039#1      TAATATTTCATGGACCATTACTATACAACACAGAAAACAACTAGCTCCTTTCTCCTAAAA 180
                      ********************************************* **************

consensus_7039#0      AGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAA 204
consensus_7039#1      AGCAGGAGCAACACCTCAAATTTCAGCCACCATCAAAGAGATCCACATTTCTGCTGGCAA 240
                      ************************************************************

consensus_7039#0      ATGGTAATCTTAAAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTT 264
consensus_7039#1      ATGGTAATCTTAGAACGTCCTGCTCTCAGTCTGATTAGGGACATTCCTCTTGACACGTTT 300
                      ************ ***********************************************

consensus_7039#0      TTTCATTCTCTCTGCCCACTGGTGGAACACATTAAACGCATCAAATTTACCTGTAAACTT 324
consensus_7039#1      TTTCATTCTCTCTGCCCACTGGTGGAACACATTAGACGCATCAAATTTACCTGTAAACTT 360
                      ********************************** *************************

consensus_7039#0      CACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGC 384
consensus_7039#1      CACCTTCTGAGCCAATTCATACAATATGTCAGGCTTCCCAGCCTTGGAGAAATCTGCAGC 420
                      ************************************************************

consensus_7039#0      AAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTA 444
consensus_7039#1      AAACTTATTGTAGTCTATCTGTGGAGTCTTCATCCCTTTTTGGATCATCTCTTCAATGTA 480
                      ************************************************************

consensus_7039#0      TTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATAAACACTGTGTAAGA 504
consensus_7039#1      TTTACATGCCTCCTCAGGTCTACCATGTCGTATATGCCCATTAATA-------------- 526
                      **********************************************              

consensus_7039#0      GTTCACATCTGGACAAATCCCCTTCCGGTGCATCTCCTCCCACACCGCACAACCCATCAT 564
consensus_7039#1      ------------------------------------------------------------
                                                                                  

consensus_7039#0      GTAGTTCCTCCCGCCAAGGAAATATGACTTCATCATCATGTTGTATGTATGGATCGTAGG 624
consensus_7039#1      ------------------------------------------------------------
                                                                                  

consensus_7039#0      CTCAAGTCCCTTCTTTATCATCTTTTTATATATTCTTGCCGCATCATCTGGCATATTCCT 684
consensus_7039#1      ------------------------------------------------------------
                                                                                  

consensus_7039#0      ATTCGTAAGTAGCTTAATGAGAG 707
consensus_7039#1      -----------------------