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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAACAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATTTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCAGTTCTCTAGAACA]
[+] EMBL CB644981 [TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAACAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCATTTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGCAGTTCTCTAGAACA]
[+] EMBL CB638675 [ ATATCAATCCATCAGGTGATCATTATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAG ]
consensusID : consensus_7083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence
[AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGTTCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTCAAATTTCTTCTTGGACCCAACAA]
[+] EMBL CB668567 [AATCCATCAGGTGATCATTATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTACTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTAAACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAGAATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATTCTAAAACTCTGCAGAGCCTGGAACCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTCTTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGTACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAAGACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCATTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTGGATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCATGCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGATGGTTCAAAAGACAAAAGAAAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACTCAGGGACAGTTGTTGAAGGATCCACAGTACACAGAACGGGAACTCAAATTTCTTCTTGGACCCAACAA]
consensusID : consensus_7083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG]
[+] EMBL AU175177 [TTTTTTTTTTTTTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATTATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTANTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTAAACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAGANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGACCCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7083#0 TCTTTTTTTTATGCGGTAAAACAGATCAAATGCACTATATCAATCCATCAGGTGATCATT 60
consensus_7083#2 -TTTTTTTTTTT-------------TTTTTTTTTTTTTTTCAATCCATCAGGNGNTCATT 46
consensus_7083#1 -----------------------------------------AATCCATCAGGTGATCATT 19
*********** * *****
consensus_7083#0 ATAACACGTCCAGTAACAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA 120
consensus_7083#2 ATAACACGNCCAGTAACAATAATGTACATCGGAAGTTCAATGAANTTTGNAAGCACGTTA 106
consensus_7083#1 ATAACACGTCCAGCACCAATAATGTACATCGGAAGTTCAATGAAATTTGCAAGCACGTTA 79
******** **** * **************************** **** **********
consensus_7083#0 CTCCAAACAACAAAATTTGGAACAATATTGTTTTGCTCGATGTAAGCAATAACTTAACTA 180
consensus_7083#2 NTCCAAACAACAAANTTTGGAACAATNTTNTTTTGNTCGNTGTAAGNAATAANTTAACTA 166
consensus_7083#1 CTCCAAACAACAAAATTTGGAACAATACTGTTTTGCTCGATGTAAGCAATAACTTAACTA 139
************* *********** * ***** *** ****** ***** *******
consensus_7083#0 AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG 240
consensus_7083#2 AACTCTGTACAATGAAACAGTAGNGTGTATANTTTTCTTGAAATCCCANTNTCAGGAAAG 226
consensus_7083#1 AACTCTGTACAATGAAACAGTAGAGTGTATACTTTTCTTGAAATCCCAATCTCAGGAAAG 199
*********************** ******* **************** * *********
consensus_7083#0 AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATT-CTAAAACTCTGCAGAGCCTGGAA 299
consensus_7083#2 ANTNTTGCAAAAAGTNTTTGTGAGCAATGTTGGGTTTCTAAAACTCTGCAGAGCCTGGGA 286
consensus_7083#1 AATGTTGCAAAAAGTATTTGTGAGCAATGTTGGATT-CTAAAACTCTGCAGAGCCTGGAA 258
* * *********** ***************** ** ********************* *
consensus_7083#0 CCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTC 359
consensus_7083#2 CCCGGG------------------------------------------------------ 292
consensus_7083#1 CCCGGGGAAATGGAATGGTGTCTCTAATGTTGTCCATTCCAGTTGCAAACTGTACTAGTC 318
******
consensus_7083#0 TTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGT 419
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 TTTCAAATCCAAGACCAAAACCAGCATGAGGAACTGATCCATATCGACGTAGATCTAAGT 378
consensus_7083#0 ACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAA 479
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 ACCACCAGTAGCTATCTTTGTTAAGATTTAACTCATCCAAGCGAGCTTCAAGGTAATCAA 438
consensus_7083#0 GACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCA 539
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 GACGTTCTTCCCTTTGGCTTCCACCAATGAGTTCACCAACCCGAGGAACCAATAGATCCA 498
consensus_7083#0 TTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTG 599
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 TTGCAGCAACTGTTTTACCATCATCATTCTCTCGCATATAGAAAGCTTTGATTTCCTTTG 558
consensus_7083#0 GATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCAT 659
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 GATAATCTCTAATTATCACCGGGCGCCCACCAAAAGCAACTTCTGTGATATATCTTTCAT 618
consensus_7083#0 GCTCACTTTGCAGATCCAATCCCCATTTGACCGGGAACTCAAATTTCTTCTTGGACCCAA 719
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 GCTCACTTTGCAGATCCAATCCCCATTTGACCTATGGAT---GGTTCAAAAGACAAAAGA 675
consensus_7083#0 CAAGTAGCTCAATAGCATCAGAATATGACAAGTGAACAAAGTTTTTCTCAACTACGTCAT 779
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 AAGAGGCATTATTTTTGTAAAATAATCACTCGCATTCTTGCATTTACCCATTTGCCTACT 735
consensus_7083#0 TTAATCTATCGATGATCCCTTTTTCAATCCATGTATTAAAGAAATCCATATCTTCTTTGC 839
consensus_7083#2 ------------------------------------------------------------
consensus_7083#1 CAGGGACAGTTGTTGAAGGATCCACAGTACACAGA--ACGGGAACTCAAATTTCTTCTTG 793
consensus_7083#0 AGTTCTCTAGAACA 853
consensus_7083#2 --------------
consensus_7083#1 GACCCAACAA---- 803
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||