|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1301 fasta sequence
[GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGCAGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGGTCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGCTCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAATGTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGATGAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCAGAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGAGATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAGAGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT]
[+] EMBL AK103711 [GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGCAGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGGTCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGCTCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAATGTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGATGAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCAGAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGAGATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAGAGTTTGCCCCCTCGTCTGGAAGAGGGTATGATGAGCTTCTGTTATTTTTGCGGTGAGAAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT]
consensusID : consensus_7202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence
[GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]
[-] EMBL CA760614 [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]
[-] EMBL CA760638 [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]
[-] EMBL CA760613 [GAGACAAGGGGGCTCTTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCACCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGCATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGAGCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCATTGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGCTAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7202#0 GCTGCGGGCCGACGAGGCCGAGAAGGAATTTTGGACTTTGATGAGGGAGCTGCTGATTGT 60
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 GAGTCAAGAACAGTTGTGAAGAGTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAA 120
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 TCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGG 180
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 GTCCCTGACCTTCTTGTCAAACTGAGCAGCAAATGTTTGATTGAGCTGGATGCAGTCCGC 240
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 AGCCCAACATCGCCCCTAGACCTCATATTCTTCCCAGGCCTCGGTGCCAAATCGCCGAGG 300
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 TCGTCTTTCCTTGGCGACAGGGTTGGGCTTGGACTGGTGGATTCACTTACTGATGATAGC 360
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 TCCACTCCCTTGGGCAGCAGGAAGGTTCTTCTTGGATCTGAGATGAGGATTACTGATAAT 420
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 GTAACTTCCAAGAACAGCTTCACTGCTCCTGTCGAAGCTGGGGTGGTTGATCAGAAGGAT 480
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 GAGAGTATGTGTGATGACCTGAAGGGTAGTTTCATGTCTCTGGATGACATTGTCAATTCA 540
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 GAGGATTACACCCGTGTTGTTTGTCGTGGTCCTAACCCTAGGACAACCCACTTCTTTGGA 600
consensus_7202#1 ------------------------------------------------------------
consensus_7202#0 GATCATGTTTTAGAATTTGAAGGTGAGCAGCTGATGCCTGATGAGAGTAAGAGTGAGGAG 660
consensus_7202#1 --------------------------------------------GAG-ACAAGGGGGCTC 15
*** * ** * *
consensus_7202#0 AGTTTGCCCCCTCGTCTGGAAGAG-GGTATGATGAGCTTCTGTTATTTTTGCGG--TGAG 717
consensus_7202#1 TTCCCACCCCCTCCACTGCTGGTGCGGTGCTGCGGGCCGACGAGGCCGAGAAGGAATTTT 75
******* *** * * *** * ** * ** *
consensus_7202#0 AAACTCGAAGAAGGGAAAGACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATG 777
consensus_7202#1 GGACTTGTTGATGAGGGAGCTGCTGA---TTGTGAGTCAAGAACAGTTGTGAAGAGCATG 132
*** * ** * * ** * * * ** * ** * ******
consensus_7202#0 GAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTCTGCA 837
consensus_7202#1 GAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAAGGCGAACCCGATCTCTTTGCA 192
******************************************************* ****
consensus_7202#0 CCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGC 897
consensus_7202#1 CCTCCTAGCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAGC 252
************************************************************
consensus_7202#0 ATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAG 957
consensus_7202#1 ATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAG 312
************************************************************
consensus_7202#0 CCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACT 1017
consensus_7202#1 CCATGGATGTGATCATATTTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCCCT 372
********************************************************* **
consensus_7202#0 GATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGA 1077
consensus_7202#1 GATGAATTTACCTATTGATTTCTTAATTTTACTTACCCGGATCCTCGAATTTTTGGAGGA 432
************************************************************
consensus_7202#0 GCCTGAACGGTAACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTC 1137
consensus_7202#1 GCCTGAACGGTGACTTTGCTTCCGGTCATATTATTATTTTGGTCGGAAAGGGCGTGCGTC 492
*********** ************************************************
consensus_7202#0 TGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCAT 1197
consensus_7202#1 TGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCCGCTGTCATGTTGACACCAT 552
**************************************** *******************
consensus_7202#0 TGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGC 1257
consensus_7202#1 TGATCACTATCATGTATCTGAATATATGTGCTTCTGCTCTTTCTGGCAGAAAGGAAGTGC 612
************************************************************
consensus_7202#0 TAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGT---------------- 1301
consensus_7202#1 TAATCTTCAAGTTTACTAATAAATGATAATCATGATGTATCTGTCAAAAAAAAAAAAAAA 672
********************************************
consensus_7202#0 -
consensus_7202#1 A 673
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||