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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1956 fasta sequence
[CCCCGCGAAGCGACCATGGCCATCCCTCCCCTCGCCGTCAGCGGGGTCGCCGTCGCCACCCTCGCCGTCCTCGGCCTCGCCGTCTTCGCCTGCCGGCGGTGGCGGCGGGGCGCGTCCCCCGCGCCCCCACCTCCCGCTTCCTCCCAGGATGATGATATTAACATGCCTCTCATATCTGACAATTTGGATGACTATTCAGTCTCGAGCAATAGTAGTACTGTCGATGAATCAGGAATTCGGATTGATAGGATTATCACTTCACCTAAGACTCATGGCATTGTTGGAAAAGGGGCAACCTATCCCACTGAATCTCATGTTATTGAAGGAGAAACTCATGTAATTGATGTTACAAACAGTAAAACGGAAGAGCTCTATTTGGGAAATACGCTTAAGCGTCCAGCTGTGGCAAATGGGCCAACACCTGATGTGAAGCACATAAGAAGGGATTCTGGAGAGAGTAATCACAATGGCACCATTCCTGACATTATAGTTGGAAGCAACCTAGCTTTGGAGGTCATAGCTGGCCCATCTCATGGAATAAACCACTATATGCAGTCAGGTAACAAGTCCATGCTACCCGTGACTCTTGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTGAGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTCGAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTGTGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGACGGTGCTGCAATAGCTGCCAGCAGGATTCTTCCACAGAACATTGCAAACATTTTGTCTCAACAGGAAACAAAAGAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACTGAAGCTGCACTCCATCATCAGTATGAGGGCTGCACAGCAACTATCCTTCTGATTTGGTTCGACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGTGAATTGGTTAAAAGAAATGTTTATGAACTTTAAATTCTG]
[+] EMBL AK071374 [CCCCGCGAAGCGACCATGGCCATCCCTCCCCTCGCCGTCAGCGGGGTCGCCGTCGCCACCCTCGCCGTCCTCGGCCTCGCCGTCTTCGCCTGCCGGCGGTGGCGGCGGGGCGCGTCCCCCGCGCCCCCACCTCCCGCTTCCTCCCAGGATGATGATATTAACATGCCTCTCATATCTGACAATTTGGATGACTATTCAGTCTCGAGCAATAGTAGTACTGTCGATGAATCAGGAATTCGGATTGATAGGATTATCACTTCACCTAAGACTCATGGCATTGTTGGAAAAGGGGCAACCTATCCCACTGAATCTCATGTTATTGAAGGAGAAACTCATGTAATTGATGTTACAAACAGTAAAACGGAAGAGCTCTATTTGGGAAATACGCTTAAGCGTCCAGCTGTGGCAAATGGGCCAACACCTGATGTGAAGCACATAAGAAGGGATTCTGGAGAGAGTAATCACAATGGCACCATTCCTGACATTATAGTTGGAAGCAACCTAGCTTTGGAGGTCATAGCTGGCCCATCTCATGGAATAAACCACTATATGCAGTCAGGTAACAAGTCCATGCTACCCGTGACTCTTGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTGAGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTCGAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTGTGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGACGGTGCTGCAATAGCTGCCAGCAGGATTCTTCCACAGAACATTGCAAACATTTTGTCTCAACAGGAAACAAAAGAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACTGAAGCTGCACTCCATCATCAGTATGAGGGCTGCACAGCAACTATCCTTCTGATTTGGTTCGACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGTGAATTGGTTAAAAGAAATGTT ]
[+] EMBL AK060622 [ ATGCTACCCGTGACTCTTGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTGAGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTCGAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTGTGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGATGGTGCTGCAATAGCTGCCAGCAGGATTCTTCCACAGAACATTGCAAACATTTTGTCTCAACAGGAAACAAAAGAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACTGAAGCTGCACTCCATCATCA GGCTGCACAGCAACTATCCTTCTGATTTGGTTCGACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAGAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGTTCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGTGAATTGGTTAAAAGAAATGTTTATGAACTTTAAATTCTG]
[-] EMBL CB664137 [ TATGAGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAACGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGACTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGCTCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTTATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTTGAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTGTTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTGGACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGATCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTTAATATCCTTTGTCAAAG ]
consensusID : consensus_7236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[CTTTGCAGGTCAAAACTGCCCCCTCTCATGAAATAACCCCCTATATGCACTCAGGTACCAAGTCCATGCTAACTCGTGACTCTGGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCCCAGATTGCCTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATTGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTAAGTTATAACCGCTTTTGTTTTTCAGTGTGTCCTTTCAAGTGTACTGAAGATTTTTATAACTAATTTATAGTAGAATTGGTCTTTTATTGCTTATGGTCCAGCATTATTATTCATCTGATGGTTAATGCTTTTATGTTCCCATATCATTCCGCTTGAAATGAAACCCCTGTGCATTTTTTTTTTTTCATATAATCCAACTATACCTAATTCAAATTGGCAAACATGTTACCACACTCGGCTTTTCTGTTTTCTTGCTAGCTGTTGACATTTCAGTTCATATGCTGGCCTATTTGGTTCCACATGTTTGCCATGCCATAGAAACTGGAGCATATATAAAAAAAAAAAAAAAA]
[-] EMBL CA760332 [CTTTGCAGGTCAAAACTGCCCCCTCTCATGAAATAACCCCCTATATGCACTCAGGTACCAAGTCCATGCTAACTCGTGACTCTGGGAAGGGTTCCTCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCCCAGATTGCCTGGAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATTGGAACATTTTTGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTGAACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTAAGTTATAACCGCTTTTGTTTTTCAGTGTGTCCTTTCAAGTGTACTGAAGATTTTTATAACTAATTTATAGTAGAATTGGTCTTTTATTGCTTATGGTCCAGCATTATTATTCATCTGATGGTTAATGCTTTTATGTTCCCATATCATTCCGCTTGAAATGAAACCCCTGTGCATTTTTTTTTTTTCATATAATCCAACTATACCTAATTCAAATTGGCAAACATGTTACCACACTCGGCTTTTCTGTTTTCTTGCTAGCTGTTGACATTTCAGTTCATATGCTGGCCTATTTGGTTCCACATGTTTGCCATGCCATAGAAACTGGAGCATATATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7236#0 CCCCGCGAAGCGACCATGGCCATCCCTCCCCTCGCCGTCAGCGGGGTCGCCGTCGCCACC 60
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 CTCGCCGTCCTCGGCCTCGCCGTCTTCGCCTGCCGGCGGTGGCGGCGGGGCGCGTCCCCC 120
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 GCGCCCCCACCTCCCGCTTCCTCCCAGGATGATGATATTAACATGCCTCTCATATCTGAC 180
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 AATTTGGATGACTATTCAGTCTCGAGCAATAGTAGTACTGTCGATGAATCAGGAATTCGG 240
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 ATTGATAGGATTATCACTTCACCTAAGACTCATGGCATTGTTGGAAAAGGGGCAACCTAT 300
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 CCCACTGAATCTCATGTTATTGAAGGAGAAACTCATGTAATTGATGTTACAAACAGTAAA 360
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 ACGGAAGAGCTCTATTTGGGAAATACGCTTAAGCGTCCAGCTGTGGCAAATGGGCCAACA 420
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 CCTGATGTGAAGCACATAAGAAGGGATTCTGGAGAGAGTAATCACAATGGCACCATTCCT 480
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 GACATTATAGTTGGAAGCAACCTAGCTTTGGAGGTCATAGCTGGCCCATCTCATGGAATA 540
consensus_7236#1 -------------------------CTTTGCAGGTCAAAACTGCCCCCTCTCATGAAATA 35
***** ****** * *** *** ******* ****
consensus_7236#0 AACCACTATATGCAGTCAGGTAACAAGTCCATGCTA-CCCGTGACTCTTGGAAGGGTTCC 599
consensus_7236#1 ACCCCCTATATGCACTCAGGTACCAAGTCCATGCTAACTCGTGACTCTGGGAAGGGTTCC 95
* ** ********* ******* ************* * ********* ***********
consensus_7236#0 TCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCACAGATTGACTG 659
consensus_7236#1 TCCAAGTCATTTGGTGTTAAAGGACTCAGAGGTGTCAGGAAAGCATGCCCAGATTGCCTG 155
************************************************ ******* ***
consensus_7236#0 GAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAAT-GGAACATTTT 718
consensus_7236#1 GAATGCAAATAAACTCAAATGGGAAATTGTGGATATGGGTAGTCTAAATTGGAACATTTT 215
************************************************* **********
consensus_7236#0 TGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTG 778
consensus_7236#1 TGAATTCCCGGTCAGTTAATCATCCTGATGTTGGATCTAGGCGTTGGGGTGAGCCTGCTG 275
************************************************************
consensus_7236#0 AACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGTCCAAATTG 838
consensus_7236#1 AACTTGCAGATGGTGATATTATAACACTTGGGAGTTCATCAAAAGTATCTGT-------A 328
****************************************************
consensus_7236#0 AGCTACAAAACCAACAACCTGTAGGAGTTGGTATAGCATCTGATCCAATGACAGCCCGTC 898
consensus_7236#1 AGTTATA--ACCGCTTTTGTTTTTCAGT--GTGTCCTTTCAAGTGTACTGAAGATTTTTA 384
** ** * *** * * *** ** * ** * * *** *
consensus_7236#0 GAACTGGGAAGAAACTTCACATGGAGGATGTCAGCTGCTGCCAGTATCCTCTTATCGGTG 958
consensus_7236#1 TAACT-------AATTTATAGTAGAATTGGTCTTTTATTGCTTATGGTCCAGCATTATTA 437
**** ** ** * ** *** * *** * * ** *
consensus_7236#0 TGGAAAAGTTTGGGCTATTTGGCATATTCGATGGCCATGGAGGGGACGGTGCTGCAATAG 1018
consensus_7236#1 TTCATCTGATGGTTAATGCTTTTATGTTCCCATATCATTCCGC---TTGAAATGAAACCC 494
* * * * * * ** *** *** * * ** **
consensus_7236#0 CTGCCAGCAGGATTCTTCCACAGAACATTGCAAACAT-TTTGTCTCAACAGGAAACAAAA 1077
consensus_7236#1 CTGT--GCATTTTTTTTTTTTCATATAATCCAACTATACCTAATTCAAATTGGCAAACAT 552
*** *** ** ** * * * *** ** * **** * * * *
consensus_7236#0 GAAAGAGTTCTTTCATGCCATAGTGCTTCAGATGTTCTTAGACATGCCTTTGCATTGACT 1137
consensus_7236#1 GTTACCACACTCGGCTTTTCT-GTTTTCTTGCTAGCTGTTGACATTTCAGTTCATATGCT 611
* * ** * * ** * * * * ***** * * *** **
consensus_7236#0 GAAGCTGCACTCCATCATCAGTATGAGGGCTGCACAGCAACTATCCTTCTGATTTGGTTC 1197
consensus_7236#1 GG---CCTATTTGGT--TCCACATGTTTGCCATGCCATAG--AAACTGGAGCATATATAA 664
* * * * ** *** ** * * * ** * * *
consensus_7236#0 GACCAGAACGAAGATTGCTTCGCCCAATGTGCTAATCTTGGTGACTCAGCTTGTATTATG 1257
consensus_7236#1 AAAAAAAAAAAAAA---------------------------------------------- 678
* * ** ** *
consensus_7236#0 AGTGTCAACGGGGAAATAATTACAATGACCGAGGATCATCGAGTAGTCAGTACAACAGAA 1317
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 CGAGCCCGGATGGCAAATTCAGGACAACCCCTGAAAGACGGTGAAAGCCGTATATGTGGA 1377
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 CTAAATCTTGGCAGGATGCTTGGGGACAAGTTTTTAAAGGAACAAGATTCACGGTTCAGC 1437
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 TCTGAACCATATGTGAGCCAGGCAGTTCGCATGACAAAAGCATGCTTAGCCTCTGCCCTT 1497
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 ATTGCTAGCGACGGGCTATGGGATGTTATTAGCGCTAACAGGGCAGCGCAGCTTGTCCTT 1557
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 GAGGGTAAGCAGAAGTACAGCGAGCAGAAAACTTCAGCAGATAAAGTAGCACATCATGTG 1617
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 TTAAGTGAAGCTAGGAAATTGCGAACCAAGGACAACACATCAGTAATATTTGTAGACCTG 1677
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 GACACTCTGAGAAGTGATCCCTGATCCTGAATCCCCAATTGCTTTTGTCAGGTCCGGAGA 1737
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 TCGTCCTACCTGCTGCTCGAACAGTTGAACAACACTATTTCTTTTGTTTCACTGGTAGTT 1797
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 AATATCCTTTGTCAAAGTTGAGCCAGGTGCTCCGGTGTTGCAGAGGATGAATGCTACAGT 1857
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 TCTCCTTGTATGCAAATACCCAGGGAGCCCCTTGTGCGGTTATGCCTGTAAATTGTGAGT 1917
consensus_7236#1 ------------------------------------------------------------
consensus_7236#0 GAATTGGTTAAAAGAAATGTTTATGAACTTTAAATTCTG 1956
consensus_7236#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||