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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1341 fasta sequence
[TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCCAACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAATGGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGAAGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAATTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTTTTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAGAAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAAGATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTTCTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTTTTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATAATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAATGTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAGCACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGACACTCAAATTTAGTATTGTGAA]
[+] EMBL AK121895 [TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCCAACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAATGGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGAAGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAATTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTTTTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAGAAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAAGATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTTCTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTTTTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATAATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAATGTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAGCACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGACACTCAAATTTAGTATTGTGAA]
[+] EMBL BE607435 [ GGTCGACAGATTCAACGACCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCC ]
consensusID : consensus_7238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF310840 [GCACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAATGCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTATTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGCAGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCCCTTTTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence
[AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU161811 [AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTCAGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTGATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCCCTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7238#0 TGATCTCTCACCCGAGATCCGAGCACGAAGGCGGCCGCGGGCGGATCCGGCGAACTTTCC 60
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 AACGCCGTGAATCGCCCCCTCCCACGTTGGAGAGTAACTAGTCCAAGTGTTGGTGGAAAT 120
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 GGCAAGCACGGCGTGCTTCGCGATTGTTAGTGAGAACGACATCCCAATCTATGAGGCAGA 180
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 AGTCGGATCTGCACCGAAAGTATGTATTCCACGCCTCATTACTTCTATGAATTTAATTAA 240
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 TTGCATTATGTTGCTGTTTATAGTGCCTTGTGTTCAGGTCACAATGTCAACATTTTGGTT 300
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 TTGTTGATATAAAAGCGACACTAATATGGAAATGGATAATCCCCTCTCTCAAAAAGAAAG 360
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 AAAGAAACAGGTGTTGGTTGAACATAAATCATGTTGAATCAGACTCTTGATTCCCATGAA 420
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 GATGCCCAATGGAATAGTTGAGTTTTGTATAAAACTGGATATAGATGGTTTGCTACCTTT 480
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 CTACAGCGTAGTGATTTTTGTTGTTGCCATTGTTTTCCTCCCTCCCTTGTCTCCATTGTT 540
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 TTCTAGGATATTGATTCATATGTAATAGTGTAAAGTTGCTAATTGATATTCAGTAATATA 600
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 ATGGAGCCTTCATGGGATGAGAATTTTTTTCCTTAGGTAACATCATACTGAATTACTAAT 660
consensus_7238#1 ------------------------------------------------------------
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 GTGCATGTCTAATCTTCTGACATTCACTTACTGTGGCAGAAAGAAGATCTGGCTTATCAG 720
consensus_7238#1 -----------------------------------------------------------G 1
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 CACCAGTTCATTCTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT 780
consensus_7238#1 CACCAGTTCATTTTGCATGCTGCTTTAGATGTTGTTCAGGACCTAGCATGGTCCACAAAT 61
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACC-TTGTTGTGTCTGTTTATGTAAC 839
consensus_7238#1 GCAATGTTCCTGAAGTCGGTCGACAGATTCAACGACCCTTGTTGTGTCTGTTTATGTAAC 121
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 TGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAG 899
consensus_7238#1 TGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAG 181
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 CTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCC 959
consensus_7238#1 CTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCC 241
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 TGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTA 1019
consensus_7238#1 TGGATTTCGCATCACATCCTTTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGGTA 301
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 TCTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCACAGCTAATAATATAGAAGCATGC 1079
consensus_7238#1 TTTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCCCAGCTAATAATATAGAAGCATGC 361
consensus_7238#2 ------------------------------------------------------------
consensus_7238#0 AGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTC 1139
consensus_7238#1 AGAGAGAAGACAAAATACCCTACTTTTTTTTTTTCCATTTATTTCCTGCTGTCATTATTC 421
consensus_7238#2 ----AGAAGACAAAATACACTACTTTTTTTTCNTCCATTTATTTCCTGCTGNCATTATTC 56
************** ************ ****************** ********
consensus_7238#0 AGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATG 1199
consensus_7238#1 AGACTCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATG 481
consensus_7238#2 AGACNCCTGAGAAATGCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCNTNTGAAACNTG 116
**** ******************************************* * ****** **
consensus_7238#0 ATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATCTATAGAAATGTACCGTTTCC 1259
consensus_7238#1 ATTTCAATTTTCACCCATTTTGTTCTGTACAGGGAAAATTTATAGAAATGTACCGTTTCC 541
consensus_7238#2 ATTTCAATTTTCNCCCATTTTGTTCTGTACAGGGNAAATCTATAGAAATGTACCGTTTCC 176
************ ********************* **** ********************
consensus_7238#0 CTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGCTAAGA 1319
consensus_7238#1 CTTTTAAAAAAAAAAAAAAAAAAAAAA--------------------------------- 568
consensus_7238#2 CTTTTNCCGTATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 217
***** * * * * * *
consensus_7238#0 CACTCAAATTTAGTATTGTGAA 1341
consensus_7238#1 ----------------------
consensus_7238#2 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||