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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1067 fasta sequence
[CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGACGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGGCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGTATATAAACCTTTGAATTTGAAATAATCTATTCCTTGTTCTCCATGAACCACACTGGTCTTATTAATTAGTTCTTTGATCCTTCCCTTTTAAAGTAAATGTTATAACTGACTTACAATTGCCTATATATAAATGTTGAACCATGAAAGAACTGCCAATGAGTTCGGCTGGTCAGCATGCAACCCGGTTTCGATCCCCAGTGTCCAAGGGGACCCCTCAGTTAAAAAATCATCTAGTTCAAAATAAAAGAAAATGTAGCAAGAATTAGATATTGCAACCATGTGGTTTATGTAGAAATTACTGAGGGTTGAGACTAGGAGCTCCCAAATTTCACTTTGATTAACTGTAACATTTTGCATATTGCAAGATCTTATGCGTATGTTACTTGCAGTTGTATTTTCTATCACATGGCTCTCTATTAGCCTGTAAAAGGTCATGAGCGGTGTACTGGCTACTGCTGTTTGCTAAAATATCATAAACTCATAATGTATTATCTAGACTTGTTCTTGGTAGTACCAGACTGATAATATAATGCGGTTAATCTT]
[+] EMBL AK110711 [CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGACGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGGCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGTATATAAACCTTTGAATTTGAAATAATCTATTCCTTGTTCTCCATGAACCACACTGGTCTTATTAATTAGTTCTTTGATCCTTCCCTTTTAAAGTAAATGTTATAACTGACTTACAATTGCCTATATATAAATGTTGAACCATGAAAGAACTGCCAATGAGTTCGGCTGGTCAGCATGCAACCCGGTTTCGATCCCCAGTGTCCAAGGGGACCCCTCAGTTAAAAAATCATCTAGTTCAAAATAAAAGAAAATGTAGCAAGAATTAGATATTGCAACCATGTGGTTTATGTAGAAATTACTGAGGGTTGAGACTAGGAGCTCCCAAATTTCACTTTGATTAACTGTAACATTTTGCATATTGCAAGATCTTATGCGTATGTTACTTGCAGTTGTATTTTCTATCACATGGCTCTCTATTAGCCTGTAAAAGGTCATGAGCGGTGTACTGGCTACTGCTGTTTGCTAAAATATCATAAACTCATAATGTATTATCTAGACTTGTTCTTGGTAGTACCAGACTGATAATATAATGCGGTTAATCTT]
consensusID : consensus_7249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 815 fasta sequence
[CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGATTTCCTTGGCACCTAATTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGACATCAAGAGTAATAGAGCCAGAGTTCGCTGTGTGGGCGTGCATGTGCGTGAGAATGGTCTGAAACAAGTTTTTTACTCTGAAGAAATGCTCTGGTTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGTTCATTTTCCATCCCTCACCCAAACCACAACGGTTT]
[+] EMBL CB630571 [CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGATTTCCTTGGCACCTAATTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGACATCAAGAGTAATAGAGCCAGAGTTCGCTGTGTGGGCGTGCATGTGCGTGAGAATGGTCTGAAACAAGTTTTTTACTCTGAAGAAATGCTCTGGTTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGTTCATTTTCCATCCCTCACCCAAACCACAACGGTTT]
[+] EMBL CB630319 [CGAGCACGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGATTTCCTTGGCACCTAATTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGACATCAAGAGTAATAGAGCCAGAGTTCGCTGTGTGGGCGTGCATGTGCGTGAGAATGGTCTGAAACAAGTTTTTTACTCTGAAGAAATGCTCTGGTTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGGTCATTTT ]
consensusID : consensus_7249#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[CACGTCTCTCGGTCTCTCCGCCTTCCCCTTCGACGGCGCGGCGGCGAGGCGCAGCAGCGGAACGGCTCCGGCGGCGAGGATCTGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGCTTCTTCTTTGCACTAGCAAAGTGTAAACCATGTGTTTGGTGTTTGCACAAGGAGGAAATGAAATAGGAATGTATTTCTTTTGATGGTATGCAAGGAACATAATGATCATCATGTATCAAAACTCTTTATGCAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGA]
[+] EMBL AK111033 [CACGTCTCTCGGTCTCTCCGCCTTCCCCTTCGACGGCGCGGCGGCGAGGCGCAGCAGCGGAACGGCTCCGGCGGCGAGGATCTGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGCTTCTTCTTTGCACTAGCAAAGTGTAAACCATGTGTTTGGTGTTTGCACAAGGAGGAAATGAAATAGGAATGTATTTCTTTTGATGGTATGCAAGGAACATAATGATCATCATGTATCAAAACTCTTTATGCAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7249#0 CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCA 60
consensus_7249#1 CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCA 60
consensus_7249#2 ------------------------------------------------------------
consensus_7249#0 GACGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGA 120
consensus_7249#1 GGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGA 120
consensus_7249#2 ------------------------------------------------------------
consensus_7249#0 GGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGGCAAGCAGGGAAGGACGGT 180
consensus_7249#1 GGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGT 180
consensus_7249#2 ----------------CACGTCTCTCGGTCTCTCCGCCTTCCCCTTCGACGGCG--CGGC 42
* * ***** ** * ** * * * * ***
consensus_7249#0 GGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGG 240
consensus_7249#1 GGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGG 240
consensus_7249#2 GGCGAGGCGC--AGCAGCGGAACGGCTCCGGCGG--CGAGGATCT----GGCTTTGATGG 94
*** *** ** * * ** * *** * * ** ***********
consensus_7249#0 TTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTA 300
consensus_7249#1 TTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTA 300
consensus_7249#2 TTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTA 154
************************************************************
consensus_7249#0 TTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCAC 360
consensus_7249#1 TTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCAC 360
consensus_7249#2 TTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCAC 214
************************************************************
consensus_7249#0 AGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAG 420
consensus_7249#1 AGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAG 420
consensus_7249#2 AGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAG 274
************************************************************
consensus_7249#0 AACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAG 480
consensus_7249#1 AACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAG 480
consensus_7249#2 AACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAG 334
************************************************************
consensus_7249#0 GACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGTATATAAACCTTTGAAT 540
consensus_7249#1 GACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAG-----CAACTTTCTGGA- 534
consensus_7249#2 GACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGC---TTCTTCTTTGCAC 391
****************************************** * ** *
consensus_7249#0 TTGAAATAATCTATTCCTTGTTCTCCATGAACCACACTGGTCTTATTAATTAGTTCTTTG 600
consensus_7249#1 --------GTTCGTTCATTTGGCTATGTGAATT---CTAG----ATGGATT---TCCTTG 576
consensus_7249#2 TAGCAA-AGTGTAAACCATGTGTTTGGTGT-TTGCACAAG---GAGGAAATG--AAATAG 444
* * * * ** * * * * * * *
consensus_7249#0 ATCCTTCCCTTTTAAAGTAAATGTTATAACTGACTTACAATTGCCTATATATAAATGTTG 660
consensus_7249#1 GCACCTAA-TTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGAC- 634
consensus_7249#2 GAATGTATTTCTTTTGATGG--TATGCAAGGAACATAATGATCATCATGTATCAAAACT- 501
* * ** * * * * * * * * *
consensus_7249#0 AACCATGAAAGAACTGCCAATGAGTTCGGCTGGTCAGC-ATGCAACCCGGTTTCGATCCC 719
consensus_7249#1 ATCAAGAGTAATAGAGCCA--GAGTTCGCTGTGTGGGC-GTGCA---------------- 675
consensus_7249#2 CTTTATGCAGCAACTTTCTG-GAGTTCGTTCATTTGGCTATGTGA--------------- 545
* * * ******* * ** **
consensus_7249#0 CAGTGTCCAAGGGGACCCCTCAGTTAAAAAATCATCTAGTTCAAAATAAAAGAAAATGTA 779
consensus_7249#1 ---TGTGCGTGAGAATGGTCTGA--AACAAGTTTTTTACTCTGAAG-------AAATGCT 723
consensus_7249#2 -ATTCTAGATGGA----------------------------------------------- 557
* * *
consensus_7249#0 GCAAGAATTAGATATTGCAACCATGTGGTTTA-TGTAGAAATTACTGAGGGTTGAGACTA 838
consensus_7249#1 CTGG---TTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGT 780
consensus_7249#2 ------------------------------------------------------------
consensus_7249#0 GGAGCTCCCAAATTTCACTTTGATTAACTGTAACATTTTGCATATTGCAAGATCTTATGC 898
consensus_7249#1 TCATTTTCCATCCCTCACC----CAAACCACAACGGTTT--------------------- 815
consensus_7249#2 ------------------------------------------------------------
consensus_7249#0 GTATGTTACTTGCAGTTGTATTTTCTATCACATGGCTCTCTATTAGCCTGTAAAAGGTCA 958
consensus_7249#1 ------------------------------------------------------------
consensus_7249#2 ------------------------------------------------------------
consensus_7249#0 TGAGCGGTGTACTGGCTACTGCTGTTTGCTAAAATATCATAAACTCATAATGTATTATCT 1018
consensus_7249#1 ------------------------------------------------------------
consensus_7249#2 ------------------------------------------------------------
consensus_7249#0 AGACTTGTTCTTGGTAGTACCAGACTGATAATATAATGCGGTTAATCTT 1067
consensus_7249#1 -------------------------------------------------
consensus_7249#2 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||