cluster # 7269

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Oryza sativa
cluster # 7269 cluster # 7269 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7269#0 length = 1021 sequences # 3

consensus_7269#1 length = 976 sequences # 1

consensusID : consensus_7269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1021
fasta sequence

                              [CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTG]

[+] EMBL AK064122             [CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGTG]
[+] EMBL CB652721             [                          TCCGCCAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCCACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGAAAGACGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTATGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA999936             [                                                                                                                                                                                                                                                                                                                                                                                TAGTGGAGCAAGGGAAAAGAAGCGACACCATACCTTTAAGCTAACAGGTGATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTTACCTCCGCAGTAAACAAAGGCTTCCAAGTACCCCCTGCAAAGTTCTATTTGGTTGATGGTG]




>consensus_7269#0
CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACAC
GGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGC
GACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACC
CATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTG
GGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAGCAAGATACCTCGCTAGA
AAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACATTTG
TTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGTGAT
GAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGGATG
GAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGATGAT
ACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAATGCT
TCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCACGTA
AAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCAAAT
CCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAGAAT
TGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATCTGACAAAGCAGCT
CCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGTGATTTTGAT
CTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCCAGGGTTCTT
ACCTCTGCAGTAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTTGGTTGATGGT
G

consensusID : consensus_7269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 976
fasta sequence

                              [GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACATATATGTCTGCTTAACAAAGTCCCAAATCTAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAATTGAGAGTGATCAAGATGATCTCGGTAACACTGAGATTATCTTTCCAGATTATGAGGACACTTTGGCTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCAAAGAAGGGTTGTTG]

[+] EMBL AK109212             [GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTTGTACCCTCTCCAAGAGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAGCATGGAGGTTCTCCAATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACATATATGTCTGCTTAACAAAGTCCCAAATCTAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAATTGAGAGTGATCAAGATGATCTCGGTAACACTGAGATTATCTTTCCAGATTATGAGGACACTTTGGCTTATCAAGTACAAGATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCAAAGAAGGGTTGTTG]




>consensus_7269#1
GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACACGGACGCG
ACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGCGACGGCG
ACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACCCATTAGA
CTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTGGGACCTT
GTACCCTCTCCAAGAGTTAATATGCTTGGAAGAGGTTCTCCAAGGTTGACCATGCTTTTA
GCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAGCATGGAGGT
TCTCCAATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGA
GTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGGATGGACTTCAGAAGC
TTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACATATATGTCTGCTTAACAAAGTC
CCAAATCTAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAG
AAAACAAAGTGGAGCTTCATGGAATAACCAGAGATGCATCATTGAGGCTGAGCCTGCTAT
ATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCGCACCAAATCTTTCCC
TCTATTTGAGGCCTTGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACAATTTC
ACCTCAACTGAGCCATTGCAACATCCAATCATTACTCAAATTGAGAGTGATCAAGATGAT
CTCGGTAACACTGAGATTATCTTTCCAGATTATGAGGACACTTTGGCTTATCAAGTACAA
GATGATGCAGATGCAACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCG
CAAAGAAGGGTTGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7269#0      CCAGCCCGTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACAC 60
consensus_7269#1      -------GTCCGCCGCCGCCCACGCCTCCGCGAGGCTCTCCGGCGACGCAACGAAGACAC 53
                             *****************************************************

consensus_7269#0      GGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGC 120
consensus_7269#1      GGACGCGACGGGGGCGGCGGCGGCGGCGCGCGGCGCGTGGCGCGACCCGGAGGCGACGGC 113
                      ************************************************************

consensus_7269#0      GACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACC 180
consensus_7269#1      GACGGCGACGGCACGGCTCACTCCTCCGGCCGCCACCTTCTCTCCGATTGCACACGCACC 173
                      ************************************************************

consensus_7269#0      CATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTG 240
consensus_7269#1      CATTAGACTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTG 233
                      ************************************************************

consensus_7269#0      GGACCTTGTACCCTCTCCAAGAGTACTACTATGGATATGAGAG---CAAGATACCTCGCT 297
consensus_7269#1      GGACCTTGTACCCTCTCCAAGAGT--TAATATGCTTGGAAGAGGTTCTCCAAGGTTGACC 291
                      ************************  ** ****  *   ****   *   *    *  * 

consensus_7269#0      AGAAAGAGGAGGGAAGAGGAGGACGATGATATGATGTTGTTTATTTTCCCTGCACTACAT 357
consensus_7269#1      ATGCTTTTAGCGAAAGCTGCACAAAAGAAGAACTCTCTGAAAGGTCGTCCTACAAAAAAG 351
                      *          * ***  *   *  *  * *      **     *   *** **  * * 

consensus_7269#0      TTGTTGAGTTCTAGTGGAGCAAGGGAAAAGAAGCGACACCATACATCAAAGCTAACAGGT 417
consensus_7269#1      CATGGAGGTTCTCC---AATAGAAAAAAACAAGAGCCTCTTGGAACCCAGCCCTAGAGAA 408
                             *****     *  *    **** *** * * *     * * *  *  * **  

consensus_7269#0      GATGAGCGTGTTCGGGAGTTGCTTGAAGGGCATGTAAAAAATTGCCGGGTAGCATTCAGG 477
consensus_7269#1      GATT--CTTGTTGAGTTATTGCATGA-------GCACAACACTCCTGAGT---ATAGGGG 456
                      ***   * ****  *   **** ***       * * ** * * * * **   **   **

consensus_7269#0      ATGGAGCCGGAAATATTTATATCTTTGGCCAATTACCTTAGAACTGAAAAGTTGGTCGAT 537
consensus_7269#1      TCAGAATGGATGGACTTCAGAAGCTTGGAACAAAATCGTGAAG----GAATTCCATGAGA 512
                         **   *      ** * *   ****   *  * * *  *      ** *   *    

consensus_7269#0      GATACTAGGATTAAAGTTGAAGAGAAGCTGGCATTCTTCTTATACATGCTTAGTCACAAT 597
consensus_7269#1      AGGACATATATGTCTGCTTAACAAAGTCCCAAATCTAAGAAAAGGAGAAAGAGCTAAAAA 572
                         **    **    * * ** * *  *    **       *   *     **  * ** 

consensus_7269#0      GCTTCATTTGAGGATTTGCAAGAGAAATTTGGGCACAGTGGGGATAGCTTTTATCGTCAC 657
consensus_7269#1      GAGA-ATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAATAACCA- 630
                      *    ** *  *    ** *****         ** ***** * *   *   **   ** 

consensus_7269#0      GTAAAGCATTTCTTCAACTCAGTTGTCCCTACGCTCTTGAAGCGGTTTTTGAAGCCTCCA 717
consensus_7269#1      GAGATGCATCATTGAGGCTGAGCCTGCTATATGGAAC-AATATAATCATCTCATTTCCTA 689
                      *  * ****   *    ** **    *  ** *      *     *  *   *    * *

consensus_7269#0      AATCCTAATGAAGTTCATTGGAAAATAGAAAAAGATCCTAGATTTTATCCCTATTTCAAG 777
consensus_7269#1      AAGCC--AAGAAGTTTCGCACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTAC 747
                      ** **  * ******       ****         *  * **     *    *  *  * 

consensus_7269#0      AATTGCCTTGGTGCAATTGACGGCACCCATATACCCATATCTATATCATC-TGACA---A 833
consensus_7269#1      GATGGACATACTGCAGAAGGAACCTACAATTTCACCTCAACTGAGCCATTGCAACATCCA 807
                       ** * * *  ****   *    *  * ** *  **  * **    ***    ***   *

consensus_7269#0      AGCA--GCTCCATTTAGAAATAGGAAAAATACTCTTAGCTAAAATGTGATGATAGCTTGT 891
consensus_7269#1      ATCATTACTCAAATTGAGAGTGATCAAGATGATCTCGGTAACACTGAGATTATCTTTCCA 867
                      * **   *** * **   * *    ** **  ***  *  * * ** *** **   *   

consensus_7269#0      GATTTTGATCTGAAGATCACTTTCATGTCTATTGGGTGGGAGGGGTCGGCTACAGATGCC 951
consensus_7269#1      GATTATGA------GGACACTTTG--GCTTATCAAGTACAAGATGA----TGCAGATGCA 915
                      **** ***      *  ******   *  ***   **   **  *     * ******* 

consensus_7269#0      AGGGTTCTTACCTCTGCAG-TAAACAAAGGCTTCCAAGTACCCCCTGGAAAGTTCTATTT 1010
consensus_7269#1      ACTGAAGATGATAATGCAAATGCTGAAAGGCTTAAAGAGATGCCGCAAAGAAGGGTTGTT 975
                      *  *    *     ****  *    ********  *   *  **    * *    *  **

consensus_7269#0      GGTTGATGGTG 1021
consensus_7269#1      G---------- 976
                      *