cluster # 7350

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Oryza sativa
cluster # 7350 cluster # 7350 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7350#0 length = 428 sequences # 1

consensus_7350#1 length = 418 sequences # 1
consensus_7350#2 length = 417 sequences # 2

consensusID : consensus_7350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CCGAGGAATGGAGAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGCGCGCTCCTCGCCTCCACGCCATGGCCGCGTCCCCNGCACCTTCCCCTCCTCCCACCACCACGNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGCGGGCANGCCCGANTNANAGGAGCACAAGCGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCANAGGCAAGGGAGAGAAAGAAGGCATACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAGAAGAAGAACTCAGAGTTGGGAAGAAAGATTCTNCACCCTACAGATTGAGAACCAGATTCTTAAGACAGATACTTGAAGATACAACTTGTGAGCAGAAGAGGGCAGGTAGCATTGNTAGTTGGAGAGGGTCATTAGAGGA]

[+] EMBL AU065999             [CCGAGGAATGGAGAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGCGCGCTCCTCGCCTCCACGCCATGGCCGCGTCCCCNGCACCTTCCCCTCCTCCCACCACCACGNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGCGGGCANGCCCGANTNANAGGAGCACAAGCGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCANAGGCAAGGGAGAGAAAGAAGGCATACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAGAAGAAGAACTCAGAGTTGGGAAGAAAGATTCTNCACCCTACAGATTGAGAACCAGATTCTTAAGACAGATACTTGAAGATACAACTTGTGAGCAGAAGAGGGCAGGTAGCATTGNTAGTTGGAGAGGGTCATTAGAGGA]




>consensus_7350#0
CCGAGGAATGGAGAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGC
GCGCTCCTCGCCTCCACGCCATGGCCGCGTCCCCNGCACCTTCCCCTCCTCCCACCACCA
CGNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGCGGGCANGCCCGANTNANAGG
AGCACAAGCGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCANAGGCAAGGGAGAG
AAAGAAGGCATACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAGAAGAAGAACTC
AGAGTTGGGAAGAAAGATTCTNCACCCTACAGATTGAGAACCAGATTCTTAAGACAGATA
CTTGAAGATACAACTTGTGAGCAGAAGAGGGCAGGTAGCATTGNTAGTTGGAGAGGGTCA
TTAGAGGA

consensusID : consensus_7350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGCGCGCTCCTCGCCTCCACGCCATGGCCGCGTCCCCGGCCACCTTCCCCTCCTCCCACCACCACNNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGNCGGGGCANGCCCGAGTNAGANGGAGCACAAGCGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCAGAGTGCAAGGGAGAGAAAGAAGGCATACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAGAAGAAGAACTCAGAGTTTGGAAGAAAGATTCTCCACCCTACAGAATNAGGAACCAGATGCTCAGACAGATACTNAAGGATTACAACTTTNAAGCAGAAGAGGGCCANGTAGCATTCTTAGTTNGAAGAGGGTAATA]

[+] EMBL AU066000             [GAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGCGCGCTCCTCGCCTCCACGCCATGGCCGCGTCCCCGGCCACCTTCCCCTCCTCCCACCACCACNNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGNCGGGGCANGCCCGAGTNAGANGGAGCACAAGCGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCAGAGTGCAAGGGAGAGAAAGAAGGCATACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAGAAGAAGAACTCAGAGTTTGGAAGAAAGATTCTCCACCCTACAGAATNAGGAACCAGATGCTCAGACAGATACTNAAGGATTACAACTTTNAAGCAGAAGAGGGCCANGTAGCATTCTTAGTTNGAAGAGGGTAATA]




>consensus_7350#1
GAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGCGCGCTCCTCGCC
TCCACGCCATGGCCGCGTCCCCGGCCACCTTCCCCTCCTCCCACCACCACNNCGCCGTCT
CCTCCTACTGCGCAGGCCAGCGGCGCCGNCGGGGCANGCCCGAGTNAGANGGAGCACAAG
CGCCTCAAAAGGTTGCTGAGGAACCGGGTATCAGCGCAGAGTGCAAGGGAGAGAAAGAAG
GCATACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAGAAGAAGAACTCAGAGTTT
GGAAGAAAGATTCTCCACCCTACAGAATNAGGAACCAGATGCTCAGACAGATACTNAAGG
ATTACAACTTTNAAGCAGAAGAGGGCCANGTAGCATTCTTAGTTNGAAGAGGGTAATA

consensusID : consensus_7350#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 417
fasta sequence

                              [ANGCCGTCCATCCATGNCCAATGGGGNAGACGAATAGTAATGGCCATAACCTTTGAATGATCTTCGCAGCGTTGCAAAGGCTTGCAAGGACTTGGCAGAANGAAGAACTCCAGANGTTTGGAAGAAAGATTCTCCGACCCTACAGAATGAGAACCAGATGCTCAGACAGATACTGAAGAATACAACTGTGAGCAGAAGAGGGCCAGGTAGCACTGCTAGTGGAGAGGGTCAATAGAGGAGAAGATGACAGCAAGTAGTAGAACACTTTATGCTCGAATATGCTTCTGGGTTTGAATTGATCCTAGAACTTGGAACTTAATTTGGTTGGATTAACCCAGGGAAAAAAAGAGAACTTTTACGGTACATTCTTCTTGAAGTATATACTACCAGTATATTTGATCTAACGGTGTAAAAAAA]

[+] EMBL AU096939             [ANGCCGTCCATCCATGNCCAATGGGGNAGACGAATAGTAATGGCCATAACCTTTGAATGATCTTCGCAGCGTTGCAAAGGCTTGCAAGGACTTGGCAGAANGAAGAACTCCAGANGTTTGGAAGAAAGATTCTCCGACCCTACAGAATGAGAACCAGATGCTCAGACAGATACTGAAGAATACAACTGTGAGCAGAAGAGGGCCAGGTAGCACTGCTAGTGGAGAGGGTCAATAGAGGAGAAGATGACAGCAAGTAGTAGAACACTTTATGCTCGAATATGCTTCTGGGTTTGAATTGATCCTAGAACTTGGAACTTAATTTGGTTGGATTAACCCAGGGAAAAAAAGAGAACTTTTACGGTACATTCTTCTTGAAGTATATACTACCAGTATATTTGATCTAACGGTGTAAAAAAA]
[+] EMBL AU096937             [                                           aaggcatacTTGAATGATCTT G AG G TG  AAGG  TG AAGGACTTGG AGAATGAAGAACT CAGA G TTGGAAGAAAGATTCTCC ACCCTACAGAATGAGAACCAGATGCTCAGACAGATACTGAAGAATACAACTGTGAGCAGAAGAGGGCCAGGTAGCACTGCTAGTGGAGAGGGTCAATAGAGGAGAAGATGACAGCAAGTAGTAGAACACTTTATGCTCGAATATGCTTCTGGGTTTGAATTGATCCTAGAACTTGGAACTTAATTTGGTTGGATTAACCCAGGGAAAAAAAGAGAACTTTTACGGTACATTCTTCTTGAAGTATATACTACCAGTATATTTGATCTAACGGTGTAAAAAAA]




>consensus_7350#2
ANGCCGTCCATCCATGNCCAATGGGGNAGACGAATAGTAATGGCCATAACCTTTGAATGA
TCTTCGCAGCGTTGCAAAGGCTTGCAAGGACTTGGCAGAANGAAGAACTCCAGANGTTTG
GAAGAAAGATTCTCCGACCCTACAGAATGAGAACCAGATGCTCAGACAGATACTGAAGAA
TACAACTGTGAGCAGAAGAGGGCCAGGTAGCACTGCTAGTGGAGAGGGTCAATAGAGGAG
AAGATGACAGCAAGTAGTAGAACACTTTATGCTCGAATATGCTTCTGGGTTTGAATTGAT
CCTAGAACTTGGAACTTAATTTGGTTGGATTAACCCAGGGAAAAAAAGAGAACTTTTACG
GTACATTCTTCTTGAAGTATATACTACCAGTATATTTGATCTAACGGTGTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7350#0      CCGAGGAATGGAGAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGC 60
consensus_7350#1      ------------GAGCGACGAGGAGATAGGGAGAGTGCCGGAGCTGGGGCTGGAGCGGGC 48
consensus_7350#2      ----ANGCCGTCCATCCATGNCCAATGGGGNAGACGAATAGTAATGGCCATAACCTTTGA 56
                                   * * * *   *    ** ***      *   ***   *       * 

consensus_7350#0      GCGCTCCTCGCCTCCACGCCATGGC---CGCGTCCCCNGC-ACCTTCCCCTCCTCCCACC 116
consensus_7350#1      GCGCTCCTCGCCTCCACGCCATGGC---CGCGTCCCCGGCCACCTTCCCCTCCTCCCACC 105
consensus_7350#2      ATGATCTTCGCAGCGTTGCAAAGGCTTGCAAGGACTTGGC-AGAANGAAGAACTCCAGAN 115
                        * ** ****  *   ** * ***   *  *  *   ** *          ****    

consensus_7350#0      ACCACGNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGC--GGGCANGCCCGANT 174
consensus_7350#1      ACCACNNCGCCGTCTCCTCCTACTGCGCAGGCCAGCGGCGCCGNCGGGGCANGCCCGAGT 165
consensus_7350#2      GTTTGGAAGAAAGATTCTCCGACCCTACAGAATGA--GAACCAG--ATGCTCAGACAGAT 171
                              *     * **** **    ***       *  **      **     *   *

consensus_7350#0      NANAGG-AGCACAAGCGCCT-CAAAAGGTTGCTGAGGAACCGGGTATCAGCGCANAG-G- 230
consensus_7350#1      NAGANGGAGCACAAGCGCCT-CAAAAGGTTGCTGAGGAACCGGGTATCAGCGCAGAGTG- 223
consensus_7350#2      ACTGAAGAATACAACTGTGAGCAGAAGAGGGCCAGGTAGC--ACTGCTAGTGGAGAGGGT 229
                             *  ****  *    ** ***   **   * * *    *   ** * * ** * 

consensus_7350#0      CAAGGGAGAGAAAGAAGGCA-TACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAG 289
consensus_7350#1      CAAGGGAGAGAAAGAAGGCA-TACTTGAATGATCTTGAGGTGAAGGTGAAGGACTTNGAG 282
consensus_7350#2      CAATAGAGGAGAAGATGACAGCAAGTAGTAGAACACTTTATGCTCGAATATGCTTCTGGG 289
                      ***  ***   **** * **  *  *    ** *      **   *   * *  *  * *

consensus_7350#0      ---AAGAAGAACTCAGAGTTGGGAAGAAAGATTCTNCACCCTACAGATTGAG-AACCAGA 345
consensus_7350#1      ---AAGAAGAACTCAGAGTTTGGAAGAAAGATTCTCCACCCTACAGAATNAGGAACCAGA 339
consensus_7350#2      TTTGAATTGATCCTAGAACTTGGAA--------CTTAATTTGGTTGGATTA---ACCCAG 338
                          *   ** *  ***  * ****        **  *       *  * *   ***   

consensus_7350#0      TTCTTAAGACAGATACTTGAAGAT-ACAACTTGTGAGCAGAAGAGGGC-AGGTAGCATTG 403
consensus_7350#1      TGCTCA-GACAGATACTNAAGGATTACAACTTTNAAGCAGAAGAGGGCCANGTAGCATTC 398
consensus_7350#2      GGAAAAAAAGAGAACTTTTACGGT-ACATTCTTCTTGAAGTATATACT--ACCAGTATAT 395
                           *  * ***   *  * * * ***   *    * ** * *         ** **  

consensus_7350#0      NTAGTTGGAGAGGGTCATTAGAGGA 428
consensus_7350#1      TTAGTTNGAAGAGGGTAATA----- 418
consensus_7350#2      TTGATCTAACGGTGTAAAAAAA--- 417
                       *  *   *    *  *  *