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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1442 fasta sequence
[GTAAAAAGATTTGAGAGCCAGCGGAAGAACCTCCAAAAGGATCCATTTTTGACACCTCGCGTGCAGGATTTCGCCGCAATCTCCCAGCGCTGATTGTTACCGCGCCGCACAAAATAGGAGATAAAAACGCAATAAAAACGGAAGAAAAAAAGAATAAAAAGGCAAAATCACATCTTTTCGGTTCCCCCATCTTGTTTTCCTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCCGCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCCAGGGCGATGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGGTGCCTAATTTTTGCGGGAATGGATTCAATCCATGGACTGGGACGCTCCCAGAGAAAAATGGCTTTCCTCGGGGAACTATGGGTTGGGAAGGTGCAGCACATGACCCATCTTACATTGTGAAGAAGATCGTGCGGCTGGAAGTTCCAACAGATGCTTATCCTCATTTCAATTTTATTGGCCGTCTGCTTGGGCCAAGGGGAAACTCACTGAAGAGAGTTGAAGCCTCAACAGGTTGCCGGGTTTTCATCAGAGGGAAGGGCTCCATAAAAGATCCCATCAAGGAGGAACAATTGAAGGGAAGGCCTGGCTATGAACATTTGAGTGATCCGACACATATCTTGATTGAAGCTGAATTACCTGCTGATGTCATTGACACAAGACTAGCACAAGCTCAAGAAATACTAGAGGACTTGTTGAAACCAGTGGAGGAGTCACAAGACTTTCTCAAGAGGCAACAGCTTAGAGAGCTTGCTGTGCTGAACTCCACATAT-CGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAGCAATGGTAGCACAAAACTCGGGAAGCAATGAC-TTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCTGCTTTACATTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTATGGTGACAGTGCACTGAGTTGCCAAAGTTTTACCTAAGGTAGTAGAAGAATACCAGA]
[+] EMBL AK063274 [GTAAAAAGATTTGAGAGCCAGCGGAAGAACCTCCAAAAGGATCCATTTTTGACACCTCGCGTGCAGGATTTCGCCGCAATCTCCCAGCGCTGATTGTTACCGCGCCGCACAAAATAGGAGATAAAAACGCAATAAAAACGGAAGAAAAAAAGAATAAAAAGGCAAAATCACATCTTTTCGGTTCCCCCATCTTGTTTTCCTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCCGCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCCAGGGCGATGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGGTGCCTAATTTTTGCGGGAATGGATTCAATCCATGGACTGGGACGCTCCCAGAGAAAAATGGCTTTCCTCGGGGAACTATGGGTTGGGAAGGTGCAGCACATGACCCATCTTACATTGTGAAGAAGATCGTGCGGCTGGAAGTTCCAACAGATGCTTATCCTCATTTCAATTTTATTGGCCGTCTGCTTGGGCCAAGGGGAAACTCACTGAAGAGAGTTGAAGCCTCAACAGGTTGCCGGGTTTTCATCAGAGGGAAGGGCTCCATAAAAGATCCCATCAAGGAGGAACAATTGAAGGGAAGGCCTGGCTATGAACATTTGAGTGATCCGACACATATCTTGATTGAAGCTGAATTACCTGCTGATGTCATTGACACAAGACTAGCACAAGCTCAAGAAATACTAGAGGACTTGTTGAAACCAGTGGAGGAGTCACAAGACTTTCTCAAGAGGCAACAGCTTAGAGAGCTTGCTGTGCTGAACTCCACATAT CGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAGCAATGGTAGCACAAAACTCGGGAAGCAATGAC TTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCTGCTTTACATTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTATGGTGACAGTGCACTGAGTTGCCAAAGTTTTACCTAAGGTAGTAGAAGAATACCAGA]
[+] EMBL OSS11056A [ CTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCCGCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCCAGGGCGATGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCA ]
[+] EMBL BI807197 [ CATATGCGAGAGGATAGCCCCCGTC AAATGGCAGTGCCTCTCCCTNCAGC ATGGTAGCAC AAACTCGGGAAGCAATGACNTTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCGGCTTTACCTTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTAaaaaaaaaa ]
consensusID : consensus_7365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[CCAAGATCGAGATGGCCCGTGCACAGCTGGTGTTGGTCGCCCNCGTGGCAGCGGCTCTGCTCCTGGCGGGCCCACACACCACCATGGCCGCCATCAGNTGCGGCCCGGNCAACTGTNCCCGTTNCNGCTTGTGAGGCCTACGGCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGTGC]
[+] EMBL OSS11055A [CCAAGATCGAGATGGCCCGTGCACAGCTGGTGTTGGTCGCCCNCGTGGCAGCGGCTCTGCTCCTGGCGGGCCCACACACCACCATGGCCGCCATCAGNTGCGGCCCGGNCAACTGTNCCCGTTNCNGCTTGTGAGGCCTACGGCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7365#0 GTAAAAAGATTTGAGAGCCAGCGGAAGAACCTCCAAAAGGATCCATTTTTGACACCTCGC 60
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 GTGCAGGATTTCGCCGCAATCTCCCAGCGCTGATTGTTACCGCGCCGCACAAAATAGGAG 120
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 ATAAAAACGCAATAAAAACGGAAGAAAAAAAGAATAAAAAGGCAAAATCACATCTTTTCG 180
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 GTTCCCCCATCTTGTTTTCCTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCC 240
consensus_7365#1 ---CCAAGATCGAGATGGCCCGTGCACAGCTGGT-GTTGGTCGCCCNCGTGG-CAGCGGC 55
** *** * * ** * ** *** * * * ** * * * *
consensus_7365#0 GCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCC 300
consensus_7365#1 TCTGCTCCTGGCGGGCCCAC--ACACCACCATGGCCGCCATCAGNTGCG--------GCC 105
* ** * * * *** * * * * *** * *** ***
consensus_7365#0 AGGGCGA-TGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCA 359
consensus_7365#1 CGGNCAACTGTNCCCGTTNCNGCTTGTGAGGCCTACGGCATCACCGGGCGCTGCCGGTCA 165
** * * *** **** * * *** ******** ** **********************
consensus_7365#0 GTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCC 419
consensus_7365#1 GTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCC 225
************************************************************
consensus_7365#0 AATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCT 479
consensus_7365#1 AATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCT 285
************************************************************
consensus_7365#0 TGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCC 539
consensus_7365#1 TGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCC 345
************************************************************
consensus_7365#0 GCAGGTGCCTAATTTTTGCGGGAATGGATTCAATCCATGGACTGGGACGCTCCCAGAGAA 599
consensus_7365#1 GCAG-TGC---------------------------------------------------- 352
**** ***
consensus_7365#0 AAATGGCTTTCCTCGGGGAACTATGGGTTGGGAAGGTGCAGCACATGACCCATCTTACAT 659
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 TGTGAAGAAGATCGTGCGGCTGGAAGTTCCAACAGATGCTTATCCTCATTTCAATTTTAT 719
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 TGGCCGTCTGCTTGGGCCAAGGGGAAACTCACTGAAGAGAGTTGAAGCCTCAACAGGTTG 779
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 CCGGGTTTTCATCAGAGGGAAGGGCTCCATAAAAGATCCCATCAAGGAGGAACAATTGAA 839
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 GGGAAGGCCTGGCTATGAACATTTGAGTGATCCGACACATATCTTGATTGAAGCTGAATT 899
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 ACCTGCTGATGTCATTGACACAAGACTAGCACAAGCTCAAGAAATACTAGAGGACTTGTT 959
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 GAAACCAGTGGAGGAGTCACAAGACTTTCTCAAGAGGCAACAGCTTAGAGAGCTTGCTGT 1019
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 GCTGAACTCCACATATCGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAG 1079
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 CAATGGTAGCACAAAACTCGGGAAGCAATGACTTTGTGATTCCAACCCCCTTGATCCCTC 1139
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 CAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCTGCTTTACATTGCATAGAT 1199
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 TTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCT 1259
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 GCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAAT 1319
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 CTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGA 1379
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 TGACTATGGTGACAGTGCACTGAGTTGCCAAAGTTTTACCTAAGGTAGTAGAAGAATACC 1439
consensus_7365#1 ------------------------------------------------------------
consensus_7365#0 AGA 1442
consensus_7365#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||