|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1184 fasta sequence
[CATGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGGCAATCCAGAGGACAGTGGGTGGGATCCCAAGGTCTGATAGACCTGAGCGCACACAACTTCGCCAGGGTAATGGACGAGGCGGTCGGCTACCACCTAGACCCGCCCTTCGACCCCGACGCCAACAGCCTCAACTTCCTCCTGGCCGTCTACGTCATCCCTTACCTGGGCATCAACGGCTACACGGGCACCAACCCGCTGATCGACGGCTACGCCACCAAGCGCCTCGTCGCCGGCCTGCTCGCCGTCGAGTCTGGCCAGGACGCCGTCGTGCGCGGCCTCCTCTTCGAGCACCGCCGCGAGACAGTGTCCCCCTACGGTGCCACGGTGGCAGAGCTCACCGACCGTGTGTCGGCGCTGCGAAACAAGCTAGGGCAGTGCGGAGTGAAGGACGAGGGGCTCATCGTGCCAGAGCAGCTCGGCGCTGAGGGGAAGATATGCACCAACATCCTCTCCGCCAACGTCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCTTAGGATACTCTATCTAACTGGCGATGAGCACGTACCCGGCGGGTTCTACCCGGAGGGCGCTAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTAATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTCCTATTACCTCACACATTAATATATAATGATAGTGTCAATACAGTAGAGGATGTGAACCCATCAACAATGGCCACCCC]
[+] EMBL AK108277 [CATGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGGCAATCCAGAGGACAGTGGGTGGGATCCCAAGGTCTGATAGACCTGAGCGCACACAACTTCGCCAGGGTAATGGACGAGGCGGTCGGCTACCACCTAGACCCGCCCTTCGACCCCGACGCCAACAGCCTCAACTTCCTCCTGGCCGTCTACGTCATCCCTTACCTGGGCATCAACGGCTACACGGGCACCAACCCGCTGATCGACGGCTACGCCACCAAGCGCCTCGTCGCCGGCCTGCTCGCCGTCGAGTCTGGCCAGGACGCCGTCGTGCGCGGCCTCCTCTTCGAGCACCGCCGCGAGACAGTGTCCCCCTACGGTGCCACGGTGGCAGAGCTCACCGACCGTGTGTCGGCGCTGCGAAACAAGCTAGGGCAGTGCGGAGTGAAGGACGAGGGGCTCATCGTGCCAGAGCAGCTCGGCGCTGAGGGGAAGATATGCACCAACATCCTCTCCGCCAACGTCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCTTAGGATACTCTATCTAACTGGCGATGAGCACGTACCCGGCGGGTTCTACCCGGAGGGCGCTAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTAATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTC ]
[-] EMBL BI306686 [ TCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCTTAGGATACTCTATCTAACTGGCGATGAGCACGTGCCCGGCGGGTTCTACCCGGAGGGCGCTAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTAATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTCCTATTACCTCACACATTAATATATAATGATAGTGTCAATACAGTAGAGGATGTGAACCCATCAACAATGGCCACCCC]
consensusID : consensus_7379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTAACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGTTACAACAAAGAATATGATTGAAATTCAAATTCACATTTCAACTATAGTTGTTTTTGGCTAGGAAAGTGTCCGTGCATTGCAATAGGAAAAACAAGTTTAAAACTAAGATTTAACTTTTCTTGATCTGGACGCTTCTTCCAGGAAACATATTTTAAGTGTGATCAT]
[+] EMBL AK109264 [TGAACTGATGAACAACCTGCAGTCAGAGATGGCGTCGCCGCGAATCTGCTGTTCGGCGCTGCTCGTGCTGCTCCTGGTTTCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTAACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGCGCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGTTACAACAAAGAATATGATTGAAATTCAAATTCACATTTCAACTATAGTTGTTTTTGGCTAGGAAAGTGTCCGTGCATTGCAATAGGAAAAACAAGTTTAAAACTAAGATTTAACTTTTCTTGATCTGGACGCTTCTTCCAGGAAACATATTTTAAGTGTGATCAT]
consensusID : consensus_7379#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[CTGCAGTGCAGACGATGGCGTGCGCCGCGAATGCTGCTGTGTCGGCGCTGCTCGTGCTGCTCCTGGTGTTGCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTGCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGTGTGCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCCCGTCTGCCCGAGTTCGCCACCAGANATCGCCCCCAGGGCAATCAAGGACATGGGTGGATCCAGGCCGCGATAACTGACCCCCCACTTCCCAGGTATTGACAAGCGTGGCACCACAACCGCCTTGAACCCACCAAGCTAACTTCCCCGCGTTACTATCCTACGG]
[+] EMBL BQ164671 [CTGCAGTGCAGACGATGGCGTGCGCCGCGAATGCTGCTGTGTCGGCGCTGCTCGTGCTGCTCCTGGTGTTGCCTCGTGCAATGCAGGTGACCACCCGGCCTGCCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTGCCACGGCGGCGTCGGCGGCGGCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGGTTCGCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGTGTGCTTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGCGGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCCCGTCTGCCCGAGTTCGCCACCAGANATCGCCCCCAGGGCAATCAAGGACATGGGTGGATCCAGGCCGCGATAACTGACCCCCCACTTCCCAGGTATTGACAAGCGTGGCACCACAACCGCCTTGAACCCACCAAGCTAACTTCCCCGCGTTACTATCCTACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7379#0 CATGAACTGATGAACAACCTGCAGT-CAGA-GATGGCGT-CGCCGCGAAT-CTGCTGT-T 55
consensus_7379#2 ------------------CTGCAGTGCAGACGATGGCGTGCGCCGCGAATGCTGCTGTGT 42
consensus_7379#1 --TGAACTGATGAACAACCTGCAGT-CAGA-GATGGCGT-CGCCGCGAAT-CTGCTGT-T 53
******* **** ******** ********** ******* *
consensus_7379#0 CGGCGCTGCTCGTGCTGCTCCTGGTTT--CCTCGTGCAATGCAGGTGACCACCCGGCCTG 113
consensus_7379#2 CGGCGCTGCTCGTGCTGCTCCTGGTGTTGCCTCGTGCAATGCAGGTGACCACCCGGCCTG 102
consensus_7379#1 CGGCGCTGCTCGTGCTGCTCCTGGTTT--CCTCGTGCAATGCAGGTGACCACCCGGCCTG 111
************************* * *******************************
consensus_7379#0 CCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTT-CCACGGCGGCGTCGGCGGCG 172
consensus_7379#2 CCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTTGCCACGGCGGCGTCGGCGGCG 162
consensus_7379#1 CCCGGCGGCGTGGTCGGCGGCGGTGGGGGCGGAGCTGTT-CCACGGCGGCGTCGGCGGCG 170
*************************************** ********************
consensus_7379#0 GCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTG-TTC 231
consensus_7379#2 GCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTGGTTC 222
consensus_7379#1 GCGGCGGCGGGGAGGCGCAGTGCAGCGCGGCGGCGCCGCACACGCCGGTGGCCGTG-TTC 229
******************************************************** ***
consensus_7379#0 GCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTC 291
consensus_7379#2 GCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGTGTGC 282
consensus_7379#1 GCGCACGACGTGGACCCGGTGCGGTTCGCGCTGAACCTGGAGTTCGCCGAGGCGGAGTTC 289
******************************************************* ** *
consensus_7379#0 TTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGC 351
consensus_7379#2 TTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTGACGCTGGGC 342
consensus_7379#1 TTCCTGCACGCGGCGTTCGGCGTGGGGCTGGACCACCTCGCCCCCAACCTAACGCTGGGC 349
************************************************** *********
consensus_7379#0 GGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGC 411
consensus_7379#2 GGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCCCGTCTGC 402
consensus_7379#1 GGCCCGCCGCCGGTGGGCGCCAGGAAGGCCGGCCTCGACGAGCTCACGTGGCGCGTCTGC 409
**************************************************** *******
consensus_7379#0 GCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGGCAATCCAGAGGACAGTGGGTGGG 471
consensus_7379#2 -CCGAGTTCGCC-ACCAG-ANATCGCCCCC---AGGGCAATC--AAGGACA-TGGGTGGA 453
consensus_7379#1 GCCGAGTTCGCCTACCAGGAGATCGGCCACCTGAGGTTACAACAAAGAATA-TGATTGAA 468
*********** ***** * **** ** * *** * ** * * ** **
consensus_7379#0 ATCCCAAGGTCTGATAGACCTG-AGCGCACACAACTTCGCCAGGGTAATGGACGAGGCGG 530
consensus_7379#2 --TCCAGGCCGCGATAA--CTG-ACCCCCCACTTCCCAGGTAT--TGACAAGCGTGGCA- 505
consensus_7379#1 ATTCAAATTCACATTTCAACTATAGTTGTTTTTGGCTAGGAAAGTGTCCGTGCATTGCAA 528
* * * ** * * * * **
consensus_7379#0 TCGGCTACCACCTAGACCCGCCCTTCGACCCCGACGCCAACAGCCTCAAC--TTCCTCCT 588
consensus_7379#2 -CCACAACCGCCTTGA---ACCCACCAAGCTAACTTCC--CCGCGTTACT--ATCCTACG 557
consensus_7379#1 TAGGAAA--AACAAGTTTAAAACTAAGATTTAACTTTTCTTGATCTGGACGCTTCTTCCA 586
* * * * * * ** * *
consensus_7379#0 GGCCGTCTACGTCATCCCTTACCTGGGCATCAACGGCTACACGGGCACCAACCCGCTGAT 648
consensus_7379#2 G----------------------------------------------------------- 558
consensus_7379#1 GGAAACATATTTTAAGTGTGATCAT----------------------------------- 611
*
consensus_7379#0 CGACGGCTACGCCACCAAGCGCCTCGTCGCCGGCCTGCTCGCCGTCGAGTCTGGCCAGGA 708
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CGCCGTCGTGCGCGGCCTCCTCTTCGAGCACCGCCGCGAGACAGTGTCCCCCTACGGTGC 768
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CACGGTGGCAGAGCTCACCGACCGTGTGTCGGCGCTGCGAAACAAGCTAGGGCAGTGCGG 828
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 AGTGAAGGACGAGGGGCTCATCGTGCCAGAGCAGCTCGGCGCTGAGGGGAAGATATGCAC 888
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CAACATCCTCTCCGCCAACGTCGACTCGCTCTCCTACAGCCGAACGCCGGCAGAGTTGCT 948
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 TAGGATACTCTATCTAACTGGCGATGAGCACGTACCCGGCGGGTTCTACCCGGAGGGCGC 1008
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 TAATGGGAGGATTGCCCGAATGTTCCTCAAAAAGCCACCTCGCATTAACCACGGTGTCTA 1068
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 ATTAGCTATGCCTACAATTGGTAAATGGGTCCTATCCTCCTATTACCTCACACATTAATA 1128
consensus_7379#2 ------------------------------------------------------------
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 TATAATGATAGTGTCAATACAGTAGAGGATGTGAACCCATCAACAATGGCCACCCC 1184
consensus_7379#2 --------------------------------------------------------
consensus_7379#1 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||