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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1803 fasta sequence
[GCCACATCGCATAATCTCGTCGCGCACACGACACACCCCCGCTGCGCACCCACCCAAGGCGAAATTTCGCCGGCGCGCGGGCCCCACGATCATCGGCCCAACTCAGGAAGCGCAAGAAGAAGCAACCGGAGAGCCTCCTCCGGCGGCCATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTCGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAAGTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAGCATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCTTTTTCTTTTTCCTGCAAGACTAGTGTACATATGCCACGTTTCATCTCTTCTTAACTTGCAAGGTTTCTAGCTAAGCTGTGCGACAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCACCATTTTGCTGTGTACATGCCATTGTACATATTTATCCACCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGACTGAATTTTGGATCCAAACTTTGGATCTAAACACAGCCTTAGTTTGAGAAACAGCAAATTTATC]
[+] EMBL AK073931 [GCCACATCGCATAATCTCGTCGCGCACACGACACACCCCCGCTGCGCACCCACCCAAGGCGAAATTTCGCCGGCGCGCGGGCCCCACGATCATCGGCCCAACTCAGGAAGCGCAAGAAGAAGCAACCGGAGAGCCTCCTCCGGCGGCCATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTCGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAAGTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAGCATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCTTTTTCTTTTTCCTGCAAGACTAGTGTACATATGCCACGTTTCATCTCTTCTTAACTTGCAAGGTTTCTAGCTAAGCTGTGCGACAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCACCATTTTGCTGTGTACATGCCATTGTACATATTTATCCACCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGACTGAATTTTGGATCCAAACTTTGGATCTAAACACAGCCTTAGTTTGAGAAACAGCAAATTTATC]
[+] EMBL CB683019 [ AGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGG ]
[-] EMBL CB683020 [ AGCTAAGCTGTGCGCCAATAACCAAGTAAGGATAAAATGTAAATAACTTTTCCCCATTTTGCTGTGTACATGCCATTGTACATATTTATCCCCCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGACTGAATTTTGGATCCAAACTTTGGATCTAAAAAGAGCCTTAGTTTGAGAAA ]
consensusID : consensus_7390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 879 fasta sequence
[GTGGCTCTATTGATGTTGCGGTCGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCATCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGGGCATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCAGACTAGNGACATATGCCACGGTTCATCTCTTCTTACTTGCAGGGTTCTAGCTAAGCTGGGCGACATTANCCAGTAGGNTAAATGGAATACCTTTTACATTTTGCTGGGNAAAAAAAAAAAAAAAAAAACGG]
[+] EMBL CA764151 [GTGGCTCTATTGATGTTGCGGTCGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCATCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGGGCATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTGAAGCAATATAGCAGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCAGACTAGNGACATATGCCACGGTTCATCTCTTCTTACTTGCAGGGTTCTAGCTAAGCTGGGCGACATTANCCAGTAGGNTAAATGGAATACCTTTTACATTTTGCTGGGNAAAAAAAAAAAAAAAAAAACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7390#0 GCCACATCGCATAATCTCGTCGCGCACACGACACACCCCCGCTGCGCACCCACCCAAGGC 60
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 GAAATTTCGCCGGCGCGCGGGCCCCACGATCATCGGCCCAACTCAGGAAGCGCAAGAAGA 120
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 AGCAACCGGAGAGCCTCCTCCGGCGGCCATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCA 180
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 CCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATC 240
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 CTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGA 300
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 CCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGC 360
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 GCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCT 420
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 AAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGA 480
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 CATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGA 540
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 GGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGG 600
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 ATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGG 660
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 TGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCT 720
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 TGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGC 780
consensus_7390#1 --------------------GTGGCTCTATTGATGTTGCGGTCGTGGACAGTGTAGCAGC 40
****************** *** *****************
consensus_7390#0 TCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGC 840
consensus_7390#1 TCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGC 100
************************************************************
consensus_7390#0 AAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAAT 900
consensus_7390#1 AAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAAT 160
************************************************************
consensus_7390#0 GTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTCGGAGCACC 960
consensus_7390#1 GTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACC 220
*************************************************** ********
consensus_7390#0 AGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACAC 1020
consensus_7390#1 AGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACAC 280
************************************************************
consensus_7390#0 CAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAA 1080
consensus_7390#1 CAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAA 340
************************************************************
consensus_7390#0 GATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGG 1140
consensus_7390#1 GATTGTCAAGAACAAGCATGCATCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGG 400
********************** *************************************
consensus_7390#0 TAAGGGCCTGAGTCGTGAATTGGAGATTATTGAAGTAGGCTTCAAACACAAGTTCATAAC 1200
consensus_7390#1 TAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAAC 460
********************************** *************************
consensus_7390#0 AAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAA 1260
consensus_7390#1 AAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAA 520
************************************************************
consensus_7390#0 ATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAG 1320
consensus_7390#1 ATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAG 580
************************************************************
consensus_7390#0 CATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAG 1380
consensus_7390#1 CATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGGG 640
********************************************************** *
consensus_7390#0 CATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTG 1440
consensus_7390#1 CATAACAGAAGAGTTCGNTTCAGCAACAGATGAACAAGTACCTGNAGAGGTTGAGGCCTG 700
***************** ************************** ***************
consensus_7390#0 AAGCAATATAGCAGTATCCTTTTTCTTTTTCTTTTTCTTTTTCCTGCAAGACTAGTGTAC 1500
consensus_7390#1 AAGCAATATAGCAGTATCCTTTTTCTTTTTCNTTTTCNTTTTCCTGCA-GACTAGNG-AC 758
******************************* ***** ********** ****** * **
consensus_7390#0 ATATGCCACGTTTCATCTCTTCTTAACTTGCAAGGTTTCTAGCTAAGCTGTGCGACAATA 1560
consensus_7390#1 ATATGCCACGGTTCATCTCTTCTTA-CTTGCAGGGTT-CTAGCTAAGCTGGGCGACATTA 816
********** ************** ****** **** ************ ****** **
consensus_7390#0 ACCAAGTAAGGATAAAATGTAAATAACTTTTCACCATTTTGCTGTGTACATGCCATTGTA 1620
consensus_7390#1 NCCAG--TAGGNTAAATGG--AATACCTTTTA--CATTTTGCTGGGNAAAAAAAAAAAAA 870
*** *** **** * **** ***** ********** * * * * *
consensus_7390#0 CATATTTATCCACCTTAGGCTGTGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAAT 1680
consensus_7390#1 AAAAAACGG--------------------------------------------------- 879
* *
consensus_7390#0 TGGAGATGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTGATGTGATGGAAAATGAC 1740
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 TGAATTTTGGATCCAAACTTTGGATCTAAACACAGCCTTAGTTTGAGAAACAGCAAATTT 1800
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 ATC 1803
consensus_7390#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||