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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence
[AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATCCCAAAAAAAAAAGGTAAGTCCCGTCAACAAACAGTCTTTTCATCTTCCTCCATTGGCAGCCATTGCTAACACTCCAACACCTGAAAAACTCCTCATTTGGGGGTTAAGGCCTGAAAAATGGTGGCTTTGCCGGGGTCCGCGGGATGGGCAAAAATGTTGTCTATGGGGCCGGTGCCGGTGTTCTCTGCCTGGAAACCAATCTCCCATTAAGGGGAACATTNGCNAACCGCCCGTTCTTGATCTCCTTGGGTNCGCAGCTCCTTTGATCTTCTCCNGCAAACCGGTNCCCCCCCCAAACGGGGTTTAACCCCAAAACACCANGGTACCCGACTTNNGTGCCCGGTGAACTTCCCCTTCCCAANTTCNTGCCCCCCGGGGGATCCCTTATTCTAAAACGGCCCCCNCCNNNGGAAACCCCCTTTTTTTCCNTTATTAAGGGGTTATTTCNAANTTGNGTTATNTNGGCCTACCTNTTCCCNTTTTAANTNTTTCCCCCCCATCCCCCACCTTNAACCGAANTATTTTAACTGGGTGCCNGATTACTNNNCCNTATGNTGCTCCGCNNTCNTNGAACTTNTCCCNTTATNTACCCCCCCGGAAAGGGTNN]
[-] EMBL CF299914 [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAA ]
[+] EMBL BE229058 [ TCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCGATCCCAAAAAAAAAAGGTAAGTCCCGTCAACAAACAGTCTTTTCATCTTCCTCCATTGGCAGCCATTGCTAACACTCCAACACCTGAAAAACTCCTCATTTGGGGGTTAAGGCCTGAAAAATGGTGGCTTTGCCGGGGTCCGCGGGATGGGCAAAAATGTTGTCTATGGGGCCGGTGCCGGTGTTCTCTGCCTGGAAACCAATCTCCCATTAAGGGGAACATTNGCNAACCGCCCGTTCTTGATCTCCTTGGGTNCGCAGCTCCTTTGATCTTCTCCNGCAAACCGGTNCCCCCCCCAAACGGGGTTTAACCCCAAAACACCANGGTACCCGACTTNNGTGCCCGGTGAACTTCCCCTTCCCAANTTCNTGCCCCCCGGGGGATCCCTTATTCTAAAACGGCCCCCNCCNNNGGAAACCCCCTTTTTTTCCNTTATTAAGGGGTTATTTCNAANTTGNGTTATNTNGGCCTACCTNTTCCCNTTTTAANTNTTTCCCCCCCATCCCCCACCTTNAACCGAANTATTTTAACTGGGTGCCNGATTACTNNNCCNTATGNTGCTCCGCNNTCNTNGAACTTNTCCCNTTATNTACCCCCCCGGAAAGGGTNN]
consensusID : consensus_7394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 197 fasta sequence
[ATACGCTACGTAACGGCATGACCATGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTT-GTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCATAGCCTACTCCTTAAGTCCAT]
[-] EMBL CF298477 [ATACGCTACGTAACGGCATGACCATGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGAGTATCAACTT GTTTTTTACATCGGTTACATCATAGTACAGGTACACAATCAACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCATAGCCTACTC ]
[+] EMBL CF301859 [ TTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAAAATATCAACTTGGTTTTTTACATCGGTTACATCATAGTACAGGTCCACAATCAACAAGGCATGCAGGGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGCCTACTCCTTAAGTCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7394#0 ------------AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 48
consensus_7394#1 ATACGCTACGTAACGGCATGACCATGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
* * * * ** *******************************
consensus_7394#0 TTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATC 108
consensus_7394#1 TTCTAAAAGAGTATCAACTTGTTTTTTACATCGGTTACATCATAGTACAGGTACACAATC 120
************************************************************
consensus_7394#0 AACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCACAGC 168
consensus_7394#1 AACAAGGCATGCAGTGCTCCATCCACAATTACATCCCAATACACCACCACCATTCATAGC 180
******************************************************** ***
consensus_7394#0 CTACTCC--GATCCCAAAAAAAAAAGGTAAGTCCCGTCAACAAACAGTCTTTTCATCTTC 226
consensus_7394#1 CTACTCCTTAAGTCCAT------------------------------------------- 197
******* * ***
consensus_7394#0 CTCCATTGGCAGCCATTGCTAACACTCCAACACCTGAAAAACTCCTCATTTGGGGGTTAA 286
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 GGCCTGAAAAATGGTGGCTTTGCCGGGGTCCGCGGGATGGGCAAAAATGTTGTCTATGGG 346
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 GCCGGTGCCGGTGTTCTCTGCCTGGAAACCAATCTCCCATTAAGGGGAACATTNGCNAAC 406
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 CGCCCGTTCTTGATCTCCTTGGGTNCGCAGCTCCTTTGATCTTCTCCNGCAAACCGGTNC 466
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 CCCCCCCAAACGGGGTTTAACCCCAAAACACCANGGTACCCGACTTNNGTGCCCGGTGAA 526
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 CTTCCCCTTCCCAANTTCNTGCCCCCCGGGGGATCCCTTATTCTAAAACGGCCCCCNCCN 586
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 NNGGAAACCCCCTTTTTTTCCNTTATTAAGGGGTTATTTCNAANTTGNGTTATNTNGGCC 646
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 TACCTNTTCCCNTTTTAANTNTTTCCCCCCCATCCCCCACCTTNAACCGAANTATTTTAA 706
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 CTGGGTGCCNGATTACTNNNCCNTATGNTGCTCCGCNNTCNTNGAACTTNTCCCNTTATN 766
consensus_7394#1 ------------------------------------------------------------
consensus_7394#0 TACCCCCCCGGAAAGGGTNN 786
consensus_7394#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||