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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1523 fasta sequence
[ATTTCTACCGCCGACGCGGCCGCGAGCCACGGCGAGCAGCGGCGGAGCAGCGACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGCGGCTGGGGGGAAGGGGGCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTCATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTTTACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAATATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTTGTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACCTTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGTAAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCAGGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATACAATGTTTTCCTTACCTAGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGTGCAAAATTTTCAAAGATCAATAGTTTGATATGTAACCTCCA]
[+] EMBL CB675418 [ATTTCTACCGCCGACGCGGCCGCGAGCCACGGCGAGCAGCGGCGGAGCAGCGACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGCGGCTGGGGGGAAGGGGGCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTCATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTTTACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACC ]
[+] EMBL AK108618 [ CGGAGCAGCGACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGCGGCTGGGGGGAAGGGGGCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCTGTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTCATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTTTACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAATATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTTGTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACCTTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGTAAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCAGGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATACAATGTTTTCCTTACCTAGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGTGCAAAATTTTCAAAGATCAATAGTTTGATATGTAACCTCCA]
[-] EMBL CB675419 [ TAGACTGATCTTCATTGAGATTTTTCTGAAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGTGCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCCTCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAATATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTTGTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACCTTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGTAAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCAGGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAGCTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAGTTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACATTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCTCGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCATTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCAC ]
consensusID : consensus_7407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[TTCTACCGCCGACGCGGCCGCCAGCCACGGGGAGCAGCGGCGGAGGAGCAGCAGCGACGCCTACGCGGCGGCCATGGAGAGGACGCCGGCGGCAGCGGCCTCGGCGGGGGGCAAGGGGGCGTGGAGGGACGGCGCCGAGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCATATCCTGTGGCATTAACTCTGCTACACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGCTCAGTCATTCCAATCGGAGCAATGCTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAATGCCCGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGGCTCGAAGAAATGAGTTGTACAATGCTTGCTATCATGTCTGTCATCAGTGGTGGGGCTATTGTGGCCTCTGCTGCTGAATTACAATCAGCTGGGCTGGCGTGAGTTACCAGAGGGGGGCAG]
[+] EMBL CA758414 [TTCTACCGCCGACGCGGCCGCCAGCCACGGGGAGCAGCGGCGGAGGAGCAGCAGCGACGCCTACGCGGCGGCCATGGAGAGGACGCCGGCGGCAGCGGCCTCGGCGGGGGGCAAGGGGGCGTGGAGGGACGGCGCCGAGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGCGGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCATATCCTGTGGCATTAACTCTGCTACACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAGATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGCTCAGTCATTCCAATCGGAGCAATGCTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAATGCCCGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGGCTCGAAGAAATGAGTTGTACAATGCTTGCTATCATGTCTGTCATCAGTGGTGGGGCTATTGTGGCCTCTGCTGCTGAATTACAATCAGCTGGGCTGGCGTGAGTTACCAGAGGGGGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7407#0 ATTTCTACCGCCGACGCGGCCGCGAGCCACGGCGAGCAGCGGCGGAGCAGCG-------- 52
consensus_7407#1 --TTCTACCGCCGACGCGGCCGCCAGCCACGGGGAGCAGCGGCGGAGGAGCAGCAGCGAC 58
********************* ******** ************** ***
consensus_7407#0 ----ACGCGGCGGCCATGGAGAGGACCGCGGCGGAGGCAGC---GGCTGGGGGGAAGGGG 105
consensus_7407#1 GCCTACGCGGCGGCCATGGAGAGGACGCCGGCGGCAGCGGCCTCGGCGGGGGGCAAGGGG 118
********************** ****** ** ** *** ***** ******
consensus_7407#0 GCGTGGAGGGACGGCGCCGTGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGC 165
consensus_7407#1 GCGTGGAGGGACGGCGCCGAGACGTACCTCCACCTCCTCTTCTACATCGCCATCTCCGGC 178
******************* ****************************************
consensus_7407#0 GGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCCTATCCT 225
consensus_7407#1 GGCCAGATCTTCTTCAACAAGTGGGTTTTATCCTCAAAAGAGATCAACTTCCCATATCCT 238
***************************************************** ******
consensus_7407#0 GTGGCATTAACTCTGCTGCACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAG 285
consensus_7407#1 GTGGCATTAACTCTGCTACACATGGTTTTCTCATCTGTAGTGTGCTTCGCAATTACAAAG 298
***************** ******************************************
consensus_7407#0 ATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGTTCAGTC 345
consensus_7407#1 ATCTTCAAGATTGTAAAGATTGAGGAGGGAATGACTACCGATATATATATTAGCTCAGTC 358
***************************************************** ******
consensus_7407#0 ATTCCAATCGGAGCAATGTTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTAT 405
consensus_7407#1 ATTCCAATCGGAGCAATGCTTGCAATGACACTCTGGCTAGGGAACAGTGCTTACCTCTAT 418
****************** *****************************************
consensus_7407#0 ATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAATGCCAGTAGCTGTGTTTCTCCTT 465
consensus_7407#1 ATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAATGCCCGTAGCTGTGTTTCTCCTT 478
***************************** ** ******** ******************
consensus_7407#0 GGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATC 525
consensus_7407#1 GGAGCTGCCTTTGGGCTCGAAGAAATGAGTTGTACAATGCTTGCTATCATGTCTGTCATC 538
************** ** **************** *************************
consensus_7407#0 AGTGTTGGGGTTATTGTGGCCTCTGTTGGTGAAATTACAATCAGCTGGGTTGGTGTGGTT 585
consensus_7407#1 AGTGGTGGGGCTATTGTGGCCTCTGCTGCTGAA-TTACAATCAGCTGGGCTGGCGTGAGT 597
**** ***** ************** ** **** *************** *** *** *
consensus_7407#0 TACCAGATGGGTGGAGTTGTCGCAGAAGCCCTTAGACTGATCTTCATTGAGATTTTTCTG 645
consensus_7407#1 TACCAGAGGGGGGCAG-------------------------------------------- 613
******* *** * **
consensus_7407#0 AAGAAAAAAGGTGTTAGGCTTAATTTGATTTCCATGATGTACTATGTTAGCCCTTGCAGT 705
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 GCTTTGTGTCTCTTTATTCCCTGGTTGTTCTTAGAGAAGCCCAAGATGGATGAAAGTGCC 765
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 TCATGGAACTTCCCACCATTCACATTGTTCTTAAACTGCCTGTGCACTTTCATCCTCAAT 825
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 ATGTCAGTTTTCCTTGTCATTTCCAGAACTAGTGCACTGACAGCTCGTGTTACGGGAGTT 885
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 GTGAGGGATTGGTCCGTGGTGTTGCTGTCAGCTGCTATCTTTGCTGATACACAGCTTACC 945
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 TTTATAAATATAATTGGCTATGCCATAGCAATAGCAGGTGTGGTTGCATATAACAATCGT 1005
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 AAGCTCAAACCGAAACCCCAAGGGAATGAGCAGCAGAGTGCTGACAGCAAAGCCAACCCA 1065
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 GGAAGCCCGCAAGATGTTGAGACATCGATCTCGACTAAAGAAGCTTCATAGCACTGAAAG 1125
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 CTGTGAGGTTTTGAACAGATTTTTGAAGAAGGAGAAATGAGCTCTCGCTTTTCCTTTGAG 1185
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 TTGGTCAGCTCTCCTTGGATACATTTTTTGTTCTCTTCCTACTTATCAGCAGGGAAGACA 1245
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 TTTTGTACAACAATGCTTAAAGAAGCGAAGTGTATACGTTAGCGTACCGTTTTGTTCGCT 1305
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 CGAAAAAGTCAGAGCACGCCATACATATCAACTAGGTTCTGTAGATGTATTTTGTTGTCA 1365
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 TTTGAACTTGCTGTAGCAATTTATCAGGTTCTTCACAAATATGCAACCTGATTCTTATAC 1425
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 AATGTTTTCCTTACCTAGGAGGTCCTGCCAATGGAGGACTGCCTGTGTCAAGTATGTGCA 1485
consensus_7407#1 ------------------------------------------------------------
consensus_7407#0 AAATTTTCAAAGATCAATAGTTTGATATGTAACCTCCA 1523
consensus_7407#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||